Docs @ ca26c4c

Author: MFC Action

documentation/architecture.html

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 <li><b>Add the module to <span class="tt">docs/module_categories.json</span></b> so it appears in this page</li>
 </ol>
 <p>Follow the pattern of existing modules like <span class="tt">m_body_forces</span> (simple) or <span class="tt">m_viscous</span> (more involved) as a template.</p>
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documentation/case_constraints.html

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 </table>
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 <p>💡 <b>Tip:</b> If you encounter a validation error, check the relevant section above or review <a href="https://github.com/MFlowCode/MFC/blob/master/toolchain/mfc/case_validator.py"><span class="tt">case_validator.py</span></a> for complete validation logic.</p>
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documentation/cli-reference.html

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 <h3 class="doxsection"><a class="anchor" id="autotoc_md83"></a>
 Debug Logging (<span class="tt">-d, --debug-log</span>)</h3>
 <p>Enables debug logging for the Python toolchain (mfc.sh internals). This is for troubleshooting the build system, not the MFC simulation code.</p>
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documentation/examples.html

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 <ul>
 <li>Papanastasiou, T. C. (1987). Flows of materials with yield. <em>J. Rheol.</em> 31, 385.</li>
 </ul>
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documentation/parameters.html

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 <div class="line"> </div>
 <div class="line"># Filter by type</div>
 <div class="line">./mfc.sh params -t real weno</div>
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documentation/physics_constraints.html

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 <li><code class="f90l">patch_icpp(i)%</code><code class="f90r">hcid</code>=hcid requires <span class="tt">files_dir</span> to be set</li>
 <li><code class="f90l">patch_icpp(i)%</code><code class="f90r">hcid</code>=hcid requires <span class="tt">file_extension</span> to be set</li>
 </ul>
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simulation/m__data__output_8fpp_8f90_source.html

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 <div class="ttc" id="anamespacem__constants_html_aebabd2fb9ed006bca8fefcc295b1547d"><div class="ttname"><a href="namespacem__constants.html#aebabd2fb9ed006bca8fefcc295b1547d">m_constants::model_eqns_6eq</a></div><div class="ttdeci">integer, parameter model_eqns_6eq</div><div class="ttdef"><b>Definition</b> <a href="m__constants_8fpp_8f90_source.html#l00139">m_constants.fpp.f90:139</a></div></div>
 <div class="ttc" id="anamespacem__constants_html_af02e45a1fd278a47990b046d12a3bf7c"><div class="ttname"><a href="namespacem__constants.html#af02e45a1fd278a47990b046d12a3bf7c">m_constants::bc_periodic</a></div><div class="ttdeci">integer, parameter bc_periodic</div><div class="ttdef"><b>Definition</b> <a href="m__constants_8fpp_8f90_source.html#l00099">m_constants.fpp.f90:99</a></div></div>
 <div class="ttc" id="anamespacem__data__output_html"><div class="ttname"><a href="namespacem__data__output.html">m_data_output</a></div><div class="ttdoc">Writes solution data, run-time stability diagnostics (ICFL, VCFL, CCFL, Rc), and probe/center-of-mass...</div><div class="ttdef"><b>Definition</b> <a href="m__data__output_8fpp_8f90_source.html#l00334">m_data_output.fpp.f90:334</a></div></div>
-<div class="ttc" id="anamespacem__data__output_html_a795efa6dc563a04a903c13a960089a58"><div class="ttname"><a href="namespacem__data__output.html#a795efa6dc563a04a903c13a960089a58">m_data_output::s_initialize_data_output_module</a></div><div class="ttdeci">impure subroutine, public s_initialize_data_output_module</div><div class="ttdoc">Initialize the data output module.</div><div class="ttdef"><b>Definition</b> <a href="m__data__output_8fpp_8f90_source.html#l02056">m_data_output.fpp.f90:2057</a></div></div>
+<div class="ttc" id="anamespacem__data__output_html_a795efa6dc563a04a903c13a960089a58"><div class="ttname"><a href="namespacem__data__output.html#a795efa6dc563a04a903c13a960089a58">m_data_output::s_initialize_data_output_module</a></div><div class="ttdeci">impure subroutine, public s_initialize_data_output_module</div><div class="ttdoc">Initialize the data output module.</div><div class="ttdef"><b>Definition</b> <a href="m__data__output_8fpp_8f90_source.html#l02072">m_data_output.fpp.f90:2073</a></div></div>
 <div class="ttc" id="anamespacem__data__output_html_a9eea8de093f055adb3b786bff3cab2d8"><div class="ttname"><a href="namespacem__data__output.html#a9eea8de093f055adb3b786bff3cab2d8">m_data_output::s_write_data_files</a></div><div class="ttdeci">impure subroutine, public s_write_data_files(q_cons_vf, q_t_sf, q_prim_vf, t_step, bc_type, beta)</div><div class="ttdoc">Write data files. Dispatch subroutine that replaces procedure pointer.</div><div class="ttdef"><b>Definition</b> <a href="m__data__output_8fpp_8f90_source.html#l00383">m_data_output.fpp.f90:384</a></div></div>
 <div class="ttc" id="anamespacem__data__output_html_ad7b2f63ea430ad1518152658c5488dcf"><div class="ttname"><a href="namespacem__data__output.html#ad7b2f63ea430ad1518152658c5488dcf">m_data_output::s_write_ib_state_file</a></div><div class="ttdeci">impure subroutine, public s_write_ib_state_file(time_step)</div><div class="ttdoc">Writes IB state records to restart_data/ib_state.dat. Must be called only on rank 0.</div><div class="ttdef"><b>Definition</b> <a href="m__data__output_8fpp_8f90_source.html#l01474">m_data_output.fpp.f90:1475</a></div></div>
 <div class="ttc" id="anamespacem__derived__types_html"><div class="ttname"><a href="namespacem__derived__types.html">m_derived_types</a></div><div class="ttdoc">Shared derived types for field data, patch geometry, bubble dynamics, and MPI I/O structures.</div><div class="ttdef"><b>Definition</b> <a href="m__derived__types_8fpp_8f90_source.html#l00323">m_derived_types.fpp.f90:323</a></div></div>

simulation/m__start__up_8fpp_8f90_source.html

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 <p>Closes communication files. </p>
 
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 <p>Closes probe files. </p>
 
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 <p>Write footer with stability criteria extrema and run-time to the information file, then close it. </p>
 
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 <p>Module deallocation and/or disassociation procedures. </p>
 
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 <p>Initialize the data output module. </p>
 
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