From 10d649a6e20fff73c8ab47a907cdce31e71a33a6 Mon Sep 17 00:00:00 2001
From: Anandashankar Anil <anandasanil@gmail.com>
Date: Tue, 4 Nov 2025 11:03:51 +0100
Subject: [PATCH 1/3] Remove unused module, previously used by taca

---
 flowcell_parser/db.py | 60 -------------------------------------------
 1 file changed, 60 deletions(-)
 delete mode 100644 flowcell_parser/db.py

diff --git a/flowcell_parser/db.py b/flowcell_parser/db.py
deleted file mode 100644
index 2ddb045..0000000
--- a/flowcell_parser/db.py
+++ /dev/null
@@ -1,60 +0,0 @@
-import couchdb
-import logging
-
-log = logging.getLogger(__name__)
-
-
-def setupServer(conf):
-    db_conf = conf['statusdb']
-    url = "https://{0}:{1}@{2}".format(
-        db_conf['username'],
-        db_conf['password'],
-        db_conf['url'])
-    return couchdb.Server(url)
-
-
-def update_doc(db, obj, over_write_db_entry=False):
-    view = db.view('info/name')
-    # If there is already a flowcell with that name in the DB
-    if len(view[obj['name']].rows) == 1:
-        remote_doc = view[obj['name']].rows[0].value
-        # remove id and rev for comparison
-        doc_id = remote_doc.pop('_id')
-        doc_rev = remote_doc.pop('_rev')
-        if remote_doc != obj:
-            # if they are different, merge the old into the new
-            if not over_write_db_entry:
-                # do not merge if over_write option is specified
-                obj = merge(obj, remote_doc)
-            obj['_id'] = doc_id
-            obj['_rev'] = doc_rev
-            db[doc_id] = obj
-            log.info("updating {0}".format(obj['name']))
-    elif len(view[obj['name']].rows) == 0:
-        # it is a new doc, upload it
-        db.save(obj)
-        log.info("saving {0}".format(obj['name']))
-    else:
-        log.warn("more than one row with name {0} found".format(obj['name']))
-
-
-# merges d2 in d1, keeps values from d1
-# taken from scilifelab
-def merge(d1, d2):
-    """ Will merge dictionary d2 into dictionary d1.
-    On the case of finding the same key, the one in d1 will be used.
-    :param d1: Dictionary object
-    :param s2: Dictionary object
-    """
-    for key in d2:
-        if key in d1:
-            if isinstance(d1[key], dict) and isinstance(d2[key], dict):
-                merge(d1[key], d2[key])
-            elif d1[key] == d2[key]:
-                pass  # same leaf value
-            else:
-                log.debug("Values for key {key} in d1 and d2 differ,",
-                          "using d1's value".format(key=key))
-        else:
-            d1[key] = d2[key]
-    return d1

From 1b98015babb62ced2e0441f11189235f4655b92d Mon Sep 17 00:00:00 2001
From: Anandashankar Anil <anandasanil@gmail.com>
Date: Tue, 4 Nov 2025 11:04:43 +0100
Subject: [PATCH 2/3] Harmonise action var name

---
 .github/workflows/check_pr_label.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/check_pr_label.yml b/.github/workflows/check_pr_label.yml
index cac9312..4a437c9 100644
--- a/.github/workflows/check_pr_label.yml
+++ b/.github/workflows/check_pr_label.yml
@@ -4,7 +4,7 @@ on:
     types: [opened, synchronize, labeled, unlabeled]
 
 jobs:
-  check-pr_label:
+  check_pr_label:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout PR
@@ -13,7 +13,7 @@ jobs:
           fetch-depth: 0 # Fetch all history for all branches and tags
 
       - name: Check if the PR contains the label validation or no validation
-        id: prlabel_check
+        id: check_pr_label
         if: |
           ! contains( github.event.pull_request.labels.*.name, 'validation') &&  ! contains( github.event.pull_request.labels.*.name, 'no validation')
         run: |

From 739e5c5cc28d589fe52c9ac938a1ce0fa973aa72 Mon Sep 17 00:00:00 2001
From: Anandashankar Anil <anandasanil@gmail.com>
Date: Tue, 4 Nov 2025 14:47:30 +0100
Subject: [PATCH 3/3] Update versions, requirements

---
 VERSIONLOG.md               | 3 +++
 flowcell_parser/__init__.py | 2 +-
 requirements.txt            | 1 -
 3 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/VERSIONLOG.md b/VERSIONLOG.md
index da266bd..3f82273 100644
--- a/VERSIONLOG.md
+++ b/VERSIONLOG.md
@@ -1,5 +1,8 @@
 # Flowcell Parser Version Log
 
+## 20251104.1
+Remove unused db module 
+
 ## 20230524.1
 Add support for NovaSeqXPlus and improve readability
 
diff --git a/flowcell_parser/__init__.py b/flowcell_parser/__init__.py
index 63bd9af..794273f 100644
--- a/flowcell_parser/__init__.py
+++ b/flowcell_parser/__init__.py
@@ -1,3 +1,3 @@
 """ Main flowcell_parser module
 """
-__version__ = '1.0.4'
+__version__ = '1.0.5'
diff --git a/requirements.txt b/requirements.txt
index ad2b4cb..c473874 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,3 +1,2 @@
 beautifulsoup4
-couchdb
 pyyaml