From eb4bf77d0f60d69968226752ed7e880f6f006e34 Mon Sep 17 00:00:00 2001 From: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> Date: Tue, 15 Sep 2026 13:25:14 +0200 Subject: [PATCH 1/4] Update OSIPI Papers section with ISMRM details Added information about MRM special edition Signed-off-by: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> --- docs/osipipapers.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/osipipapers.md b/docs/osipipapers.md index 7bd8256..afd6fc0 100644 --- a/docs/osipipapers.md +++ b/docs/osipipapers.md @@ -1,6 +1,7 @@ # OSIPI Papers -Peer-reviewed journal articles authored by OSIPI task forces, documenting the inventories, code collections, and challenges developed by the initiative. +ISMRM papers are published in the [MRM special section : ISMRM open initiative for perfusion imaging (OSIPI)](https://onlinelibrary.wiley.com/toc/15222594/2024/91/5) +Here is a list of the peer-reviewed journal articles authored by OSIPI task forces, documenting the inventories, code collections, and challenges developed by the initiative. ## Peer-reviewed papers From 839f1922273994200221085f7d3230b84f2703fa Mon Sep 17 00:00:00 2001 From: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> Date: Tue, 15 Sep 2026 14:22:57 +0200 Subject: [PATCH 2/4] Update ISMRM abstracts with proper formatting Signed-off-by: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> --- docs/ismrmabstracts.md | 49 +++++++++++++++++++++++++++++++----------- 1 file changed, 37 insertions(+), 12 deletions(-) diff --git a/docs/ismrmabstracts.md b/docs/ismrmabstracts.md index a615846..6120612 100644 --- a/docs/ismrmabstracts.md +++ b/docs/ismrmabstracts.md @@ -2,21 +2,46 @@ OSIPI-related abstracts presented at ISMRM annual meetings, grouped by year and labeled by the contributing task force. -## 2021 +## Invited presentations + +- van Houdt P. Perfusion & Permeability: Applications. [ISMRM 2023](https://cds.ismrm.org/protected/23MProceedings/PDFfiles/E4495_Yj6yvyRcE.html) +- Petr J. ASL-BIDS and OSIPI Pipeline Inventory. MRI Together, 2022. +- Petr J. OSIPI Inventory of ASL Pipelines. ISMRM Workshop on Perfusion MRI: From Head to Toe, 2022. +- Tadimalla S. OSIPI Experience on Scientific. [MRI Together 2021](https://www.youtube.com/watch?v=yGBiDGBtJGY). +- Berks M. Open Science Initiative for Perfusion Imaging (OSIPI): a global collaboration of researchers committed to improving software in their field. [SeptembRSE 2021](https://youtube.com/watch?v=dk9SzgCCH4s). + +## 2026 +- TF 4.6 — An Online ISMRM-OSIPI Platform for Automated and Standardized Reporting of ASL MRI Acquisition Parameters. [ISMRM 2026, abstract 567-03-002](http://echo.ismrm.org/p/ISMRM2026/567-03-002) +- TF 6.3 — Reproducibility of intravoxel incoherent motion imaging: impact of the fitting algorithm. [ISMRM 2026, abstract 668-03-013](http://echo.ismrm.org/p/ISMRM2026/668-03-013) + +## 2025 +- TF 5.3 — AURA: building ‘A User Repository of Artifacts for Perfusion Imaging’. [ESMRMB 2025, PA07](https://link.springer.com/article/10.1007/s10334-025-01300-z) -- TF1.1 — ASL software inventory. [ISMRM 2021, abstract 2713](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2713.html) -- TF6.1 — ISMRM-OSIPI ASL MRI Challenge. [ISMRM 2021, abstract 2714](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2714.html) -- TF6.2 — DSC/DCE-MRI challenges. [ISMRM 2021, abstract 1094](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1094.html) +## 2024 +- Towards reproducible perfusion MRI analysis: the ISMRM Open Science Initiative for Perfusion Imaging. [ESMRMB 2024, abstract 419](https://link.springer.com/article/10.1007/s10334-024-01191-6) +- Towards reproducible perfusion MRI analysis: the ISMRM Open Science Initiative for Perfusion Imaging. MR in RT 2024 +- TF2.4 — Towards Reproducible Intravoxel Incoherent Motion (IVIM) Analysis: The ISMRM Open Science Initiative for Perfusion Imaging. [ISMRM 2024, abstract 0540](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0540_78FxmiQdO.html) +- TF6.1 — ISMRM - Open Science Initiative for Perfusion Imaging (OSIPI): The multi-delay Arterial Spin Labeling Challenge. [ISMRM 2024, abstract 4869](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/4869_aHE9XdQeI.html) +- TF6.2 — The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): A Challenge for Reproducible DCE-MRI AI-based Analysis. [ISMRM 2024, abstract 0245](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0245_En1mDaR8b.html) + +## 2023 + +- Open Science Initiative for Perfusion Imaging (OSIPI). Member-initiaited symposium on "The ISMRM Open: Promoting Open Science" ISMRM 2023 +- OSIPI Pipeline & Software Inventory. PArt of the Member-Initiated Tutorials on "So You’ve Got ASL Data … Now What?" ISMRM 2023 +- TF6.1 — The ASL Challenge Reproduction Study: Replicating Findings from The OSIPI-ISMRM ASL MRI Challenge. [ISMRM 2023, abstract 0914](https://cds.ismrm.org/protected/23MProceedings/PDFfiles/2576_5y45zUR7T.html) ## 2022 +- TF2.2 — The Open Science Initiative for Perfusion Imaging (OSIPI): ASL Code Library. [ISMRM 2022, abstract 0914](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0914.html) +- TF2.2 — OSIPI Inventory of ASL Pipelines. [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) +- TF4.2 — DCE/DSC Perfusion Imaging Lexicon & Reporting Framework. [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) +- TF6.1 — The Open Science Initiative for Perfusion Imaging (OSIPI): Results from the ASL MRI Challenge. [ISMRM 2022, abstract 0910](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0910.html) +- TF6.1 — OSIPI-DCE Challenge: Preliminary Results. [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) +- TF6.2 — The Open Science Initiative for Perfusion Imaging (OSIPI): Early Results from the DCE-MRI Challenge. [ISMRM 2022, abstract 0047](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0047.html) +- TF6.2 — Results of the OSIPI Challenges (ASL). [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) -- TF2.2 — ASL code collection. [ISMRM 2022, abstract 0914](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0914.html) -- TF6.1 — ISMRM-OSIPI ASL MRI Challenge. [ISMRM 2022, abstract 0910](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0910.html) -- TF6.2 — DSC/DCE-MRI challenges. [ISMRM 2022, abstract 0047](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0047.html) +## 2021 -## Presentations +- TF1.1 — The Open Source Initiative for Perfusion Imaging (OSIPI): ASL Pipeline inventory. [ISMRM 2021, abstract 2713](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2713.html) +- TF6.1 — The Open Source Initiative for Perfusion Imaging (OSIPI) ASL MRI Challenge. [ISMRM 2021, abstract 2714](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2714.html) +- TF6.2 — he Open Source Initiative for Perfusion Imaging (OSIPI): DCE-MRI Challenge. [ISMRM 2021, abstract 1094](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1094.html) -- Petr J. ASL-BIDS and OSIPI Pipeline Inventory. MRI Together, 2022. -- Petr J. OSIPI Inventory of ASL Pipelines. ISMRM Workshop on Perfusion MRI: From Head to Toe, 2022. -- Tadimalla S. OSIPI Experience on Scientific. [MRI Together 2021](https://www.youtube.com/watch?v=yGBiDGBtJGY). -- Berks M. Open Science Initiative for Perfusion Imaging (OSIPI): a global collaboration of researchers committed to improving software in their field. [SeptembRSE 2021](https://youtube.com/watch?v=dk9SzgCCH4s). From 4d90afa8e5ab79cefa75ba16a34a097f761c28bb Mon Sep 17 00:00:00 2001 From: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> Date: Tue, 15 Sep 2026 14:41:07 +0200 Subject: [PATCH 3/4] Update ismrmabstracts.md Signed-off-by: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> --- docs/ismrmabstracts.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/ismrmabstracts.md b/docs/ismrmabstracts.md index 6120612..12f3148 100644 --- a/docs/ismrmabstracts.md +++ b/docs/ismrmabstracts.md @@ -15,6 +15,8 @@ OSIPI-related abstracts presented at ISMRM annual meetings, grouped by year and - TF 6.3 — Reproducibility of intravoxel incoherent motion imaging: impact of the fitting algorithm. [ISMRM 2026, abstract 668-03-013](http://echo.ismrm.org/p/ISMRM2026/668-03-013) ## 2025 +- TF 2.2 — ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing. ISMRM 2024, abstract 0972 +- TF 4.6 — A user-friendly ISMRM-OSIPI online software tool for standardized and automated reporting of ASL acquisition parameters. ISMRM 2024 - TF 5.3 — AURA: building ‘A User Repository of Artifacts for Perfusion Imaging’. [ESMRMB 2025, PA07](https://link.springer.com/article/10.1007/s10334-025-01300-z) ## 2024 From 63e1264b665793912c75b8e05b461ff7aa4b2a98 Mon Sep 17 00:00:00 2001 From: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> Date: Tue, 15 Sep 2026 15:42:41 +0200 Subject: [PATCH 4/4] Update ISMRM abstracts for 2025 Signed-off-by: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> --- docs/ismrmabstracts.md | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/docs/ismrmabstracts.md b/docs/ismrmabstracts.md index 12f3148..f618e3f 100644 --- a/docs/ismrmabstracts.md +++ b/docs/ismrmabstracts.md @@ -15,10 +15,13 @@ OSIPI-related abstracts presented at ISMRM annual meetings, grouped by year and - TF 6.3 — Reproducibility of intravoxel incoherent motion imaging: impact of the fitting algorithm. [ISMRM 2026, abstract 668-03-013](http://echo.ismrm.org/p/ISMRM2026/668-03-013) ## 2025 -- TF 2.2 — ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing. ISMRM 2024, abstract 0972 -- TF 4.6 — A user-friendly ISMRM-OSIPI online software tool for standardized and automated reporting of ASL acquisition parameters. ISMRM 2024 +- TF 2.6 — ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing. [ISMRM 2025, abstract 3692](https://cds.ismrm.org/protected/25MProceedings/PDFfiles/3692_Nv2N2aQQv.html) +- TF 2.6 — The OSIPI Python Package for Standardized Perfusion MRI Analysis. [ISMRM workshop on Perfusion MRI 2025](https://cds.ismrm.org/protected/Perfusion25/abstracts/Nasser.pdf) +- TF 4.6 — A user-friendly ISMRM-OSIPI online software tool for standardized and automated reporting of ASL acquisition parameters. ISMRM 2025 +- TF 4.6 — An Online ISMRM-OSIPI Tool for Standardized Reporting of ASL Acquisition Parameters. [ISMRM workshop on Perfusion MRI 2025](https://cds.ismrm.org/protected/Perfusion25/abstracts/Xu%20Hanliang.pdf) - TF 5.3 — AURA: building ‘A User Repository of Artifacts for Perfusion Imaging’. [ESMRMB 2025, PA07](https://link.springer.com/article/10.1007/s10334-025-01300-z) + ## 2024 - Towards reproducible perfusion MRI analysis: the ISMRM Open Science Initiative for Perfusion Imaging. [ESMRMB 2024, abstract 419](https://link.springer.com/article/10.1007/s10334-024-01191-6) - Towards reproducible perfusion MRI analysis: the ISMRM Open Science Initiative for Perfusion Imaging. MR in RT 2024