From c3d0031d428803c3c192bec18a044252ad41fe2c Mon Sep 17 00:00:00 2001 From: WardDeb Date: Sat, 26 Sep 2026 22:52:40 +0200 Subject: [PATCH] test files zenodo, osx install drop --- docs/content/example_step_by_step.rst | 2 +- docs/content/installation.rst | 8 +------- 2 files changed, 2 insertions(+), 8 deletions(-) diff --git a/docs/content/example_step_by_step.rst b/docs/content/example_step_by_step.rst index 24205d9ab6..a6a9806f1f 100644 --- a/docs/content/example_step_by_step.rst +++ b/docs/content/example_step_by_step.rst @@ -9,7 +9,7 @@ If you're using the command-line version you can easily follow the given example All protocols assume that you have uploaded your files into a Galaxy instance with a deepTools installation, e.g., `deepTools Galaxy `_. If you need help to get started with Galaxy in general, e.g. to upload your data, see :doc:`help_galaxy_intro` and :doc:`help_galaxy_dataup`. -.. tip:: If you would like to try out the protocols with **sample data**, go to `deepTools Galaxy `__ --> "Shared Data" --> "Data Libraries" --> "deepTools Test Files". Simply select BED/BAM/bigWig files and click, "to History". You can also download the test data sets to your computer by clicking "Download" at the top. +.. tip:: If you would like to try out the protocols with **sample data**, test data can be downloaded from `Zenodo `__. .. contents:: How to do...? :local: diff --git a/docs/content/installation.rst b/docs/content/installation.rst index 483d571004..48497b8835 100644 --- a/docs/content/installation.rst +++ b/docs/content/installation.rst @@ -4,7 +4,7 @@ Installation Remember -- deepTools are available for **command line usage** as well as for **integration into Galaxy servers** ! -.. contents:: +.. contents:: :local: Command line installation using ``conda`` @@ -16,12 +16,6 @@ The recommended way to install deepTools (including its requirements) is via `mi $ conda install -c conda-forge -c bioconda deeptools -Note that for ARM architecture (e.g. M1 on OSX) you could go via the pip installation (see below), or install via the osx-64 env: - -.. code:: bash - - $ CONDA_SUBDIR=osx-64 conda create -c conda-forge -c bioconda -n deeptools deeptools - Command line installation using ``pip`` ---------------------------------------