_quarto.yml

project:
  type: website
  output-dir: docs
  resources:
    - isamples_202608_release_manifest.json
    - assets/js/source-palette.js
    - assets/js/sql-builders.js
    - assets/js/explorer-utils.js
    # #171: the substrate search engine + tokenizer are ES modules imported
    # by explorer.qmd at page runtime — without these resource entries the
    # import 404s and the OJS dependency cascade silently kills the entire
    # search cell (boot fine, search dead: exactly what the smoke's 150s
    # search timeout looks like).
    - assets/js/search_substrate.js
    - assets/js/search_tokenizer.js
    # #295: quarto.js unconditionally fetches /listings.json on every page
    # whose frontmatter declares `categories:` (explorer.qmd and others do,
    # for the tag chips under the title). Quarto only ever GENERATES that
    # file for sites with an actual `listing:` page — this project has none,
    # so the fetch 404s on every load (harmless — the JS no-ops on non-200 —
    # but it's a real, reported console error, see #295/#297). Shipping a
    # static empty-array listings.json is exactly what Quarto itself would
    # emit for a site with zero listings: same shape, zero behavior change,
    # just a 200 instead of a 404.
    - listings.json

website:
  title: "iSamples"
  favicon: assets/isamplesfavicon.ico
  navbar:
    logo: assets/isampleslogopetal.png
    left:
      - href: index.qmd
        text: Home
      - href: explorer.qmd
        text: Interactive Explorer
      - text: How to Use
        menu:
          - text: Overview
            href: how-to-use.qmd
          - text: Guided Tour
            href: tutorials/explorer_guided_tour.qmd
      - text: About
        menu:
          - text: Objectives
            href: about.qmd
          - text: PIs and Contributors
            href: "about.qmd#team"
          - text: Photo Gallery
            href: "about.qmd#photo-gallery"
          - text: "Background & History"
            href: "about.qmd#background-history"
      - text: "Architecture & Vocabularies"
        menu:
          - text: Overview
            href: design/index.qmd
          - text: Requirements
            href: design/requirements.md
          - text: Metadata Model
            href: "https://isamples.org/metadata/"
          - text: Vocabularies
            href: models/index.qmd
          - text: "Technical: Narrow vs Wide"
            href: tutorials/narrow_vs_wide_performance.qmd
          - text: "Technical: Why H3?"
            href: tutorials/why_h3.qmd
      - text: "Research & Resources"
        menu:
          - text: "Publications & Conferences"
            href: pubs.qmd
          - text: Zenodo Community
            href: "pubs.qmd#zenodo-community"
          - text: Github Repositories
            href: "pubs.qmd#github-repositories"
    right:
      - icon: github
        href: https://github.com/isamplesorg
      - icon: slack
        href: https://isamples.slack.com/
  sidebar:
    - id: how-to-use
      title: "How to Use"
      style: "docked"
      search: true
      contents:
        - href: how-to-use.qmd
          text: Overview
        - text: "Guided Tour"
          href: tutorials/explorer_guided_tour.qmd
    - id: about
      title: "About"
      style: "docked"
      search: true
      contents:
        - href: about.qmd
          text: Objectives
        - text: "PIs and Contributors"
          href: "about.qmd#team"
        - text: "Photo Gallery"
          href: "about.qmd#photo-gallery"
        - text: "Background & History"
          href: "about.qmd#background-history"
    - id: architecture
      title: "Architecture & Vocabularies"
      style: "docked"
      search: true
      contents:
        - href: design/index.qmd
          text: Overview
        - href: design/requirements.md
          text: Requirements
        - text: Schema
          href: "https://isamples.org/metadata/"
        - href: models/index.qmd
          text: Vocabularies
        - text: "Technical: Narrow vs Wide"
          href: tutorials/narrow_vs_wide_performance.qmd
        - text: "Technical: Why H3?"
          href: tutorials/why_h3.qmd
    - id: research
      title: "Research & Resources"
      style: "docked"
      search: true
      contents:
        - text: Publications & Conferences
          href: pubs.qmd
        - text: Zenodo Community
          href: "pubs.qmd#zenodo-community"
        - text: Github Repositories
          href: "pubs.qmd#github-repositories"

  repo-url: https://github.com/isamplesorg/isamplesorg.github.io
  repo-actions: [edit, issue]

  page-footer: 
    left: >
      © Copyright 2020-2026, iSamples Project. Based on work
      under National Science Foundation (NSF) Grant Numbers
      [2004839](https://nsf.gov/awardsearch/showAward?AWD_ID=2004839),
      [2004562](https://nsf.gov/awardsearch/showAward?AWD_ID=2004562),
      [2004642](https://nsf.gov/awardsearch/showAward?AWD_ID=2004642), and
      [2004815](https://nsf.gov/awardsearch/showAward?AWD_ID=2004815).
    right: >
      Opinions, findings, and conclusions or recommendations expressed in
      this material are those of the authors and do not necessarily reflect
      the views of the [NSF](https://nsf.gov/).
  
format:
  html:
    toc: true
    toc-depth: 4
    number-sections: true
    anchor-sections: false
    number-depth: 8
    lightbox: true
    theme: cosmo
    css: styles.css

#filters:
#  - pandoc-plantuml
#  comment out for testing