[DPG] Introduce treeCreatorTpcQa workflow

DPG/Tasks/AOTTrack/PID/TPC/CMakeLists.txt

@@ -1,4 +1,4 @@
 # Copyright 2019-2020 CERN and copyright holders of ALICE O2.
 # See https://alice-o2.web.cern.ch/copyright for details of the copyright holders.
 # All rights not expressly granted are reserved.
 #
@@ -10,17 +10,22 @@
 # or submit itself to any jurisdiction.
 
 # TPC
 o2physics_add_dpl_workflow(pid-tpc-qa
     SOURCES qaPIDTPC.cxx
     PUBLIC_LINK_LIBRARIES O2Physics::AnalysisCore
     COMPONENT_NAME Analysis)
 
 o2physics_add_dpl_workflow(pid-tpc-qa-sig
     SOURCES qaPIDTPCSignal.cxx
     PUBLIC_LINK_LIBRARIES O2Physics::AnalysisCore O2Physics::AnalysisCCDB
     COMPONENT_NAME Analysis)
 
 o2physics_add_dpl_workflow(pid-tpc-qa-mc
     SOURCES qaPIDTPCMC.cxx
     PUBLIC_LINK_LIBRARIES O2Physics::AnalysisCore
     COMPONENT_NAME Analysis)
+
+o2physics_add_dpl_workflow(tree-creator-pid-tpc-qa
+    SOURCES treeCreatorPidTpcQa.cxx
+    PUBLIC_LINK_LIBRARIES O2Physics::AnalysisCore O2Physics::AnalysisCCDB
+    COMPONENT_NAME Analysis)

DPG/Tasks/AOTTrack/PID/TPC/treeCreatorPidTpcQa.cxx

@@ -0,0 +1,297 @@
+// Copyright 2019-2020 CERN and copyright holders of ALICE O2.
+// See https://alice-o2.web.cern.ch/copyright for details of the copyright holders.
+// All rights not expressly granted are reserved.
+//
+// This software is distributed under the terms of the GNU General Public
+// License v3 (GPL Version 3), copied verbatim in the file "COPYING".
+//
+// In applying this license CERN does not waive the privileges and immunities
+// granted to it by virtue of its status as an Intergovernmental Organization
+// or submit itself to any jurisdiction.
+
+/// \file treeCreatorPidTpcQa.cxx
+/// \brief Creates trees with PID QA variables along with variables used for NN training
+///
+/// \author Ana Marin <ana.marin@cern.ch>
+/// \author Oleksii Lubynets <oleksii.lubynets@cern.ch>
+
+#include "treeCreatorPidTpcQa.h"
+
+#include "Common/CCDB/RCTSelectionFlags.h"
+#include "Common/CCDB/ctpRateFetcher.h"
+#include "Common/DataModel/EventSelection.h"
+#include "Common/DataModel/Multiplicity.h"
+#include "Common/DataModel/PIDResponseTOF.h"
+#include "Common/DataModel/PIDResponseTPC.h"
+#include "Common/DataModel/TrackSelectionTables.h"
+#include "DPG/Tasks/TPC/tpcSkimsTableCreator.h"
+#include "DPG/Tasks/TPC/utilsTpcSkimsTableCreator.h"
+
+#include <CCDB/BasicCCDBManager.h>
+#include <Framework/ASoA.h>
+#include <Framework/AnalysisDataModel.h>
+#include <Framework/AnalysisHelpers.h>
+#include <Framework/AnalysisTask.h>
+#include <Framework/Configurable.h>
+#include <Framework/HistogramRegistry.h>
+#include <Framework/HistogramSpec.h>
+#include <Framework/InitContext.h>
+#include <Framework/Logger.h>
+#include <Framework/StaticFor.h>
+#include <Framework/runDataProcessing.h>
+#include <ReconstructionDataFormats/PID.h>
+
+#include <TString.h>
+
+#include <array>
+#include <cmath>
+#include <cstdint>
+#include <string>
+
+using namespace o2;
+using namespace o2::framework;
+using namespace o2::track;
+using namespace o2::dpg_tpcskimstablecreator;
+
+#define DO_FOR_ALL_PARTICLES(MACRO) \
+  MACRO(El, Electron)               \
+  MACRO(Mu, Muon)                   \
+  MACRO(Pi, Pion)                   \
+  MACRO(Ka, Kaon)                   \
+  MACRO(Pr, Proton)                 \
+  MACRO(De, Deuteron)               \
+  MACRO(Tr, Triton)                 \
+  MACRO(He, Helium3)                \
+  MACRO(Al, Alpha)
+
+struct TreeCreatorPidTpcQa {
+  Produces<o2::aod::QaPidTpc> rowPidTpcQa;
+
+  Configurable<int> applyEvSel{"applyEvSel", 2, "Flag to apply event selection: 0 -> no event selection, 1 -> Run 2 event selection, 2 -> Run 3 event selection"};
+  Configurable<float> cutVtxZ{"cutVtxZ", 10.f, "Cut on vertex Z position [cm]"};
+  Configurable<int> trackSelection{"trackSelection", 1, "Track selection: 0 -> No Cut, 1 -> kGlobalTrack, 2 -> kGlobalTrackWoPtEta, 3 -> kGlobalTrackWoDCA, 4 -> kQualityTracks, 5 -> kInAcceptanceTracks"};
+  Configurable<bool> requireGlobalTrack{"requireGlobalTrack", true, "Skip non-global tracks"};
+  Configurable<bool> requireIts{"requireIts", true, "Skip tracks without ITS"};
+  Configurable<int16_t> cutMinTPCNcls{"cutMinTPCNcls", 0, "Minimum number or TPC Clusters for tracks"};
+  Configurable<float> cutRapidity{"cutRapidity", 999.f, "Rapidity cut"};
+  Configurable<float> nClNorm{"nClNorm", 152.f, "Number of cluster normalization. Run 2: 159, Run 3 152"};
+  // Configurable for the path of CCDB General Run Parameters LHC Interface information
+  Configurable<std::string> ccdbPathGrpLhcIf{"ccdbPathGrpLhcIf", "GLO/Config/GRPLHCIF", "Path on the CCDB for the GRPLHCIF object"};
+  // Configurables for output tables reservation size
+  Configurable<float> reserveRatio{"reserveRatio", 1.f, "Ratio of how many rows expected in the output table to the input Tracks table size"};
+  Configurable<bool> saveReserveQaHisto{"saveReserveQaHisto", true, "Flag to save the DF-wise ratio of output table size to that of input table"};
+  // Configurables for run condtion table
+  Configurable<std::string> rctLabel{"rctLabel", "CBT_hadronPID", "select 1 [CBT, CBT_hadronPID, CBT_muon_glo] see O2Physics/Common/CCDB/RCTSelectionFlags.h"};
+  Configurable<bool> checkZdc{"checkZdc", false, "set ZDC flag for PbPb"};
+  Configurable<bool> treatLimitedAcceptanceAsBad{"treatLimitedAcceptanceAsBad", false, "reject all events where the detectors relevant for the specified Runlist are flagged as LimitedAcceptance"};
+  Configurable<bool> requireGoodRct{"requireGoodRct", false, "require good detector flag in run condtion table"};
+
+#define DECLARE_PARTICLE_WISE_CONFIGURABLES(ParticleNameShort, ParticleNameLong)                                                                                                                                                                          \
+  Configurable<float> cutTpcInnerParameterMin##ParticleNameLong{"cutTpcInnerParameterMin" #ParticleNameLong, 0.f, "Lower-value cut on tpcInnerParam for " #ParticleNameLong};   /* o2-linter: disable=name/configurable (Configurable defined in macro)*/ \
+  Configurable<float> cutTpcInnerParameterMax##ParticleNameLong{"cutTpcInnerParameterMax" #ParticleNameLong, 999.f, "Upper-value cut on tpcInnerParam for " #ParticleNameLong}; /* o2-linter: disable=name/configurable (Configurable defined in macro)*/ \
+  Configurable<float> cutNSigmaTpcAbs##ParticleNameLong{"cutNSigmaTpcAbs" #ParticleNameLong, 999.f, "Cut on absolute value of nSigmaTpc for " #ParticleNameLong};               // o2-linter: disable=name/configurable (Configurable defined in macro)
+
+  DO_FOR_ALL_PARTICLES(DECLARE_PARTICLE_WISE_CONFIGURABLES)
+#undef DECLARE_PARTICLE_WISE_CONFIGURABLES
+
+#define PACK_CONFIGURABLES_TO_ARRAY(ParticleNameShort, ParticleNameLong) &cutTpcInnerParameterMin##ParticleNameLong,
+  std::array<Configurable<float>*, PID::Alpha + 1> cutTpcInnerParameterMin{
+    DO_FOR_ALL_PARTICLES(PACK_CONFIGURABLES_TO_ARRAY)};
+#undef PACK_CONFIGURABLES_TO_ARRAY
+
+#define PACK_CONFIGURABLES_TO_ARRAY(ParticleNameShort, ParticleNameLong) &cutTpcInnerParameterMax##ParticleNameLong,
+  std::array<Configurable<float>*, PID::Alpha + 1> cutTpcInnerParameterMax{
+    DO_FOR_ALL_PARTICLES(PACK_CONFIGURABLES_TO_ARRAY)};
+#undef PACK_CONFIGURABLES_TO_ARRAY
+
+#define PACK_CONFIGURABLES_TO_ARRAY(ParticleNameShort, ParticleNameLong) &cutNSigmaTpcAbs##ParticleNameLong,
+  std::array<Configurable<float>*, PID::Alpha + 1> cutNSigmaTpcAbs{
+    DO_FOR_ALL_PARTICLES(PACK_CONFIGURABLES_TO_ARRAY)};
+#undef PACK_CONFIGURABLES_TO_ARRAY
+
+  HistogramRegistry registry{"registry", {}};
+
+  Service<o2::ccdb::BasicCCDBManager> ccdb{};
+
+  ctpRateFetcher mRateFetcher;
+
+  o2::aod::rctsel::RCTFlagsChecker rctChecker;
+
+  using CollisionsExtra = soa::Join<aod::Collisions, aod::Mults, aod::EvSels>;
+  using TrackCandidates = soa::Join<aod::Tracks, aod::TracksExtra, aod::TrackSelection>;
+
+  Preslice<TrackCandidates> perCollisionTracks = aod::track::collisionId;
+
+  int mEnabledParticles{0};
+  int mProcessedParticles{0};
+
+  template <o2::track::PID::ID ParticleId>
+  bool initPerParticle()
+  {
+    static_assert(ParticleId >= 0 && ParticleId <= PID::Alpha && "Particle index outside limits");
+    int enabledProcesses{0};
+
+    switch (ParticleId) {
+#define INIT_PARTICLE(ParticleNameShort, ParticleNameLong)                                                             \
+  case PID::ParticleNameLong:                                                                                          \
+    if (!doprocess##ParticleNameLong && !doprocessFull##ParticleNameLong && !doprocessFullWithTOF##ParticleNameLong) { \
+      return false;                                                                                                    \
+    }                                                                                                                  \
+    if (doprocess##ParticleNameLong) {                                                                                 \
+      ++enabledProcesses;                                                                                              \
+    }                                                                                                                  \
+    if (doprocessFull##ParticleNameLong) {                                                                             \
+      ++enabledProcesses;                                                                                              \
+    }                                                                                                                  \
+    if (doprocessFullWithTOF##ParticleNameLong) {                                                                      \
+      ++enabledProcesses;                                                                                              \
+    }                                                                                                                  \
+    LOG(info) << "Enabled TPC QA for " << #ParticleNameLong;                                                           \
+    break;
+
+      DO_FOR_ALL_PARTICLES(INIT_PARTICLE)
+#undef INIT_PARTICLE
+    }
+    if (enabledProcesses != 1) {
+      LOG(fatal) << "Cannot enable more than one process function per particle, check and retry!";
+    }
+    return true;
+  }
+
+  void init(o2::framework::InitContext&)
+  {
+    static_for<0, PID::Alpha>([&](auto ParticleId) {
+      mEnabledParticles += static_cast<int>(initPerParticle<ParticleId>());
+    });
+
+    ccdb->setURL("http://alice-ccdb.cern.ch");
+    ccdb->setCaching(true);
+    ccdb->setFatalWhenNull(false);
+
+    rctChecker.init(rctLabel, checkZdc, treatLimitedAcceptanceAsBad);
+
+    if (saveReserveQaHisto) {
+      registry.add("hOutputRatio", "Table out/in ratio;Table out/in ratio;Entries", {HistType::kTH1F, {{100, 0, reserveRatio}}});
+    }
+  }
+
+  template <o2::track::PID::ID ParticleId, bool IsFullTable, bool IsTofTable, typename TrackType>
+  void processSingleParticle(CollisionsExtra const& collisions,
+                             TrackType const& tracks)
+  {
+    if (mProcessedParticles == 0) {
+      rowPidTpcQa.reserve(tracks.size() * reserveRatio);
+    }
+
+    std::string irSource{};
+    float sqrtSNN{}; // placeholder to satisfy evaluateIrSourceAndSqrtSnn's signature
+    bool isFirstCollision{true};
+    for (const auto& collision : collisions) {
+      if (!isEventSelected(collision, applyEvSel) || (std::abs(collision.posZ()) > cutVtxZ)) {
+        continue;
+      }
+
+      const bool isGoodRctEvent = rctChecker.checkTable(collision);
+      if (requireGoodRct && !isGoodRctEvent) {
+        continue;
+      }
+
+      const auto bc = collision.bc_as<aod::BCsWithTimestamps>();
+      if (isFirstCollision) {
+        evaluateIrSourceAndSqrtSnn(ccdb, ccdbPathGrpLhcIf, bc.timestamp(), irSource, sqrtSNN);
+      }
+      isFirstCollision = false;
+      const float ft0Occ = collision.ft0cOccupancyInTimeRange();
+      const float multTPC = collision.multTPC() / MultiplicityNorm;
+      const auto hadronicRate = !irSource.empty() ? mRateFetcher.fetch(ccdb.service, bc.timestamp(), bc.runNumber(), irSource) * OneToKilo : 0.;
+
+      const auto tracksFromCollision = tracks.sliceBy(perCollisionTracks, static_cast<int>(collision.globalIndex()));
+
+      for (const auto& track : tracksFromCollision) {
+        bool isGoodTrack = isTrackSelected(track, trackSelection);
+        isGoodTrack &= (!requireGlobalTrack || track.isGlobalTrack());
+        isGoodTrack &= (!requireIts || track.hasITS());
+        isGoodTrack &= track.hasTPC();
+        isGoodTrack &= (track.tpcNClsFound() >= cutMinTPCNcls);
+
+        const float rapidity = track.rapidity(PID::getMass(ParticleId));
+        const float momentum = track.p();
+        const float nClNormalized = std::sqrt(nClNorm / track.tpcNClsFound());
+        const auto nclPID = static_cast<float>(track.tpcNClsPID());
+        const float phi = track.phi();
+        const float tgl = track.tgl();
+        const float tpcInnerParam = track.tpcInnerParam();
+        const float signed1Pt = track.signed1Pt();
+        const float nSigmaTpc = o2::aod::pidutils::tpcNSigma<ParticleId>(track);
+
+        isGoodTrack &= (std::fabs(rapidity) <= cutRapidity);
+        isGoodTrack &= (tpcInnerParam >= *cutTpcInnerParameterMin.at(ParticleId));
+        isGoodTrack &= (tpcInnerParam <= *cutTpcInnerParameterMax.at(ParticleId));
+        isGoodTrack &= (std::fabs(nSigmaTpc) <= *cutNSigmaTpcAbs.at(ParticleId));
+
+        if (!isGoodTrack) {
+          continue;
+        }
+
+        float dedxDiff{UndefValueFloat};
+        float dedxExpected{UndefValueFloat};
+        float expSigma{UndefValueFloat};
+
+        if constexpr (IsFullTable) {
+          dedxDiff = o2::aod::pidutils::tpcExpSignalDiff<ParticleId>(track);
+          dedxExpected = track.tpcSignal() - dedxDiff;
+          expSigma = o2::aod::pidutils::tpcExpSigma<ParticleId>(track);
+        }
+
+        float nSigmaTof{UndefValueFloat};
+
+        if constexpr (IsTofTable) {
+          nSigmaTof = o2::aod::pidutils::tofNSigma<ParticleId>(track);
+        }
+
+        rowPidTpcQa(isGoodRctEvent, ParticleId, ft0Occ, hadronicRate, multTPC, nClNormalized, nclPID, phi, tgl, tpcInnerParam, rapidity, momentum, signed1Pt, nSigmaTpc, dedxExpected, dedxDiff, expSigma, nSigmaTof);
+      } // tracksFromCollision
+    } // collisions
+    ++mProcessedParticles;
+    if (mProcessedParticles == mEnabledParticles) {
+      mProcessedParticles = 0;
+      if (saveReserveQaHisto) {
+        registry.fill(HIST("hOutputRatio"), static_cast<double>((rowPidTpcQa.lastIndex() + 1)) / tracks.size());
+      }
+    }
+  }
+
+#define MAKE_PROCESS_FUNCTIONS(ParticleNameShort, ParticleNameLong)                                                                                           \
+  void process##ParticleNameLong(CollisionsExtra const& collisions,                                                                                           \
+                                 soa::Join<TrackCandidates, aod::pidTPC##ParticleNameShort> const& tracks,                                                    \
+                                 aod::BCsWithTimestamps const&)                                                                                               \
+  {                                                                                                                                                           \
+    processSingleParticle<PID::ParticleNameLong, false, false>(collisions, tracks);                                                                           \
+  }                                                                                                                                                           \
+  PROCESS_SWITCH(TreeCreatorPidTpcQa, process##ParticleNameLong, Form("Process for the %s hypothesis for TPC NSigma QA", #ParticleNameLong), false);          \
+                                                                                                                                                              \
+  void processFull##ParticleNameLong(CollisionsExtra const& collisions,                                                                                       \
+                                     soa::Join<TrackCandidates, aod::pidTPCFull##ParticleNameShort> const& tracks,                                            \
+                                     aod::BCsWithTimestamps const&)                                                                                           \
+  {                                                                                                                                                           \
+    processSingleParticle<PID::ParticleNameLong, true, false>(collisions, tracks);                                                                            \
+  }                                                                                                                                                           \
+  PROCESS_SWITCH(TreeCreatorPidTpcQa, processFull##ParticleNameLong, Form("Process for the %s hypothesis for full TPC PID QA", #ParticleNameLong), false);    \
+                                                                                                                                                              \
+  void processFullWithTOF##ParticleNameLong(CollisionsExtra const& collisions,                                                                                \
+                                            soa::Join<TrackCandidates, aod::pidTPCFull##ParticleNameShort, aod::pidTOFFull##ParticleNameShort> const& tracks, \
+                                            aod::BCsWithTimestamps const&)                                                                                    \
+  {                                                                                                                                                           \
+    processSingleParticle<PID::ParticleNameLong, true, true>(collisions, tracks);                                                                             \
+  }                                                                                                                                                           \
+  PROCESS_SWITCH(TreeCreatorPidTpcQa, processFullWithTOF##ParticleNameLong, Form("Process for the %s hypothesis for full TPC PID QA with the TOF info added", #ParticleNameLong), false);
+
+  DO_FOR_ALL_PARTICLES(MAKE_PROCESS_FUNCTIONS)
+#undef MAKE_PROCESS_FUNCTIONS
+};
+
+WorkflowSpec defineDataProcessing(ConfigContext const& cfgc)
+{
+  return WorkflowSpec{adaptAnalysisTask<TreeCreatorPidTpcQa>(cfgc)};
+}
+#undef DO_FOR_ALL_PARTICLES

DPG/Tasks/AOTTrack/PID/TPC/treeCreatorPidTpcQa.h

@@ -0,0 +1,57 @@
+// Copyright 2019-2020 CERN and copyright holders of ALICE O2.
+// See https://alice-o2.web.cern.ch/copyright for details of the copyright holders.
+// All rights not expressly granted are reserved.
+//
+// This software is distributed under the terms of the GNU General Public
+// License v3 (GPL Version 3), copied verbatim in the file "COPYING".
+//
+// In applying this license CERN does not waive the privileges and immunities
+// granted to it by virtue of its status as an Intergovernmental Organization
+// or submit itself to any jurisdiction.
+
+/// \file treeCreatorPidTpcQa.h
+/// \author Ana Marin <ana.marin@cern.ch>
+/// \author Oleksii Lubynets <oleksii.lubynets@cern.ch>
+/// \brief  Creates trees with PID QA variables along with variables used for NN training
+
+#ifndef DPG_TASKS_AOTTRACK_PID_TPC_TREECREATORPIDTPCQA_H_
+#define DPG_TASKS_AOTTRACK_PID_TPC_TREECREATORPIDTPCQA_H_
+
+#include "DPG/Tasks/TPC/tpcSkimsTableCreator.h"
+
+#include <Framework/ASoA.h>
+#include <Framework/AnalysisDataModel.h>
+
+namespace o2::aod
+{
+namespace dpg_tpcpidqa
+{
+DECLARE_SOA_COLUMN(NSigmaTpc, nSigmaTpc, float);
+DECLARE_SOA_COLUMN(DedxExpected, dedxExpected, float);
+DECLARE_SOA_COLUMN(DedxDiff, dedxDiff, float);
+DECLARE_SOA_COLUMN(ExpSigma, expSigma, float);
+DECLARE_SOA_COLUMN(NSigmaTof, nSigmaTof, float);
+} // namespace dpg_tpcpidqa
+
+DECLARE_SOA_TABLE(QaPidTpc, "AOD", "QAPIDTPC",
+                  tpcskims::IsGoodRct,
+                  tpcskims::PidIndex,
+                  tpcskims::Ft0Occ,
+                  tpcskims::HadronicRate,
+                  tpcskims::NormMultTPC,
+                  tpcskims::NormNClustersTPC,
+                  tpcskims::NormNClustersTPCPID,
+                  o2::aod::track::Phi,
+                  o2::aod::track::Tgl,
+                  o2::aod::track::TPCInnerParam,
+                  o2::aod::track::Y,
+                  o2::aod::track::P,
+                  o2::aod::track::Signed1Pt,
+                  dpg_tpcpidqa::NSigmaTpc,
+                  dpg_tpcpidqa::DedxExpected,
+                  dpg_tpcpidqa::DedxDiff,
+                  dpg_tpcpidqa::ExpSigma,
+                  dpg_tpcpidqa::NSigmaTof)
+} // namespace o2::aod
+
+#endif // DPG_TASKS_AOTTRACK_PID_TPC_TREECREATORPIDTPCQA_H_