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Refactor workflow to DAG architecture with expanded testing, CI modernisation, and validated numerical equivalence - #281

Merged

harryswift01 merged 115 commits into

mainfrom

173-refactor-levels

Feb 26, 2026

Merged

Refactor workflow to DAG architecture with expanded testing, CI modernisation, and validated numerical equivalence#281
harryswift01 merged 115 commits into
mainfrom
173-refactor-levels

Commits on Nov 10, 2025
- restructure current `levels` file into abstracted and defined new classes and files
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  8ef0ac1
Commits on Nov 11, 2025
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- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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- restructure files from main branch merge
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- move `main.py` and remove `CodeEntropy/cli` folder
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Commits on Dec 1, 2025
- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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- updated `level_manager.py` to reflect graph implementation
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Commits on Dec 5, 2025
Commits on Dec 8, 2025
- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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Commits on Dec 11, 2025
- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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Commits on Dec 12, 2025
- update `execute()` within `entropy_manager.py` to use DAG system
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- change `execute()` within `entropy_manager.py` to use `LevelDAG` rather than `LevelGraph`
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Commits on Jan 7, 2026
- refined `entropy_graph.py`
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- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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Commits on Jan 9, 2026
Commits on Jan 12, 2026
- refine entropy calculations and move current structure into DAG based graph nodes
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Commits on Jan 15, 2026
Commits on Jan 16, 2026
- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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- remove `levels/neighbours.py` and `levels/nodes/compute_neighbours.py`
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Commits on Jan 23, 2026
- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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Commits on Jan 26, 2026
- implement full serial graph architecture with `LevelDAG` and `EntropyGraph`
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Commits on Jan 30, 2026
Commits on Feb 2, 2026
- update to include the residue table results
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Commits on Feb 5, 2026
- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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- Add axes.py from origin/main
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Commits on Feb 6, 2026
- Merge remote-tracking branch 'origin/main' into 173-refactor-levels
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  83f654b
- update entropy calculations within DAG to behave like procedural implementation
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  39903d1
Commits on Feb 12, 2026
- include `forcetorque` and `forcetorque_covariances` withi DAG architecture
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  6875f54
- simplify get axes selection within `FrameAxesNode`
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  b81e12a
Commits on Feb 13, 2026
- include `forcetorque` matrices within reducing step
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  510cd97
Commits on Feb 16, 2026
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Commits on Feb 24, 2026
- update `results/reporter.py` to have enriched data output:
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  cb22762
- update `entropy/workflow.py` to use update `save_dataframes_as_json`
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  226b37f
Commits on Feb 25, 2026
Commits on Feb 26, 2026

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