feat: remove obsolete spack configs and compilation flags

cmake/apply-patches.cmake

@@ -0,0 +1,52 @@
+# Apply one or more unified patches without failing when a patch is already
+# present in an incremental ExternalProject build.
+if( NOT DEFINED GEOS_PATCH_FILES OR GEOS_PATCH_FILES STREQUAL "" )
+  message( FATAL_ERROR "GEOS_PATCH_FILES must name at least one patch file." )
+endif()
+
+if( NOT DEFINED GEOS_PATCH_STRIP OR GEOS_PATCH_STRIP STREQUAL "" )
+  set( GEOS_PATCH_STRIP 1 )
+endif()
+
+# A pipe is used as the list separator because semicolons are list separators
+# in CMake command-line definitions.
+string( REPLACE "|" ";" _geos_patch_files "${GEOS_PATCH_FILES}" )
+
+foreach( _geos_patch_file IN LISTS _geos_patch_files )
+  if( NOT EXISTS "${_geos_patch_file}" )
+    message( FATAL_ERROR "Patch file does not exist: ${_geos_patch_file}" )
+  endif()
+
+  execute_process(
+    COMMAND patch --batch --forward --dry-run -p${GEOS_PATCH_STRIP} -i "${_geos_patch_file}"
+    RESULT_VARIABLE _geos_patch_forward_status
+    OUTPUT_VARIABLE _geos_patch_forward_output
+    ERROR_VARIABLE _geos_patch_forward_error )
+
+  if( _geos_patch_forward_status EQUAL 0 )
+    execute_process(
+      COMMAND patch --batch --forward -p${GEOS_PATCH_STRIP} -i "${_geos_patch_file}"
+      RESULT_VARIABLE _geos_patch_apply_status
+      OUTPUT_VARIABLE _geos_patch_apply_output
+      ERROR_VARIABLE _geos_patch_apply_error )
+    if( NOT _geos_patch_apply_status EQUAL 0 )
+      message( FATAL_ERROR
+        "Failed to apply patch ${_geos_patch_file}:\n"
+        "${_geos_patch_apply_output}${_geos_patch_apply_error}" )
+    endif()
+  else()
+    execute_process(
+      COMMAND patch --batch --reverse --dry-run -p${GEOS_PATCH_STRIP} -i "${_geos_patch_file}"
+      RESULT_VARIABLE _geos_patch_reverse_status
+      OUTPUT_VARIABLE _geos_patch_reverse_output
+      ERROR_VARIABLE _geos_patch_reverse_error )
+    if( _geos_patch_reverse_status EQUAL 0 )
+      message( STATUS "Patch already applied: ${_geos_patch_file}" )
+    else()
+      message( FATAL_ERROR
+        "Patch cannot be applied or recognized as already applied: ${_geos_patch_file}\n"
+        "Forward check:\n${_geos_patch_forward_output}${_geos_patch_forward_error}\n"
+        "Reverse check:\n${_geos_patch_reverse_output}${_geos_patch_reverse_error}" )
+    endif()
+  endif()
+endforeach()

cmake/geos-host-config.cmake.in

@@ -0,0 +1,119 @@
+# Generated by the legacy GEOS TPL build.
+# Configuration: @GEOS_TPL_HOST_CONFIG_FILENAME@
+#
+# This file configures a downstream GEOS build.  It intentionally does not
+# set CMAKE_INSTALL_PREFIX, so the GEOS installation location remains a
+# downstream choice.
+
+set(GEOS_TPL_HOST_CONFIG_LOADED ON CACHE INTERNAL "Generated GEOS TPL host config loaded")
+set(GEOS_TPL_DIR "@GEOS_TPL_HOST_CONFIG_TPL_DIR@" CACHE PATH "GEOS third-party library installation")
+
+set(CMAKE_BUILD_TYPE "@CMAKE_BUILD_TYPE@" CACHE STRING "")
+set(CMAKE_C_COMPILER "@CMAKE_C_COMPILER@" CACHE FILEPATH "")
+set(CMAKE_CXX_COMPILER "@CMAKE_CXX_COMPILER@" CACHE FILEPATH "")
+set(CMAKE_Fortran_COMPILER "@CMAKE_Fortran_COMPILER@" CACHE FILEPATH "")
+set(CMAKE_CXX_STANDARD "@GEOS_TPL_HOST_CONFIG_CXX_STANDARD@" CACHE STRING "")
+set(CMAKE_CXX_STANDARD_REQUIRED ON CACHE BOOL "")
+set(CMAKE_CXX_EXTENSIONS OFF CACHE BOOL "")
+set(BLT_CXX_STD "@BLT_CXX_STD@" CACHE STRING "")
+set(ENABLE_FORTRAN OFF CACHE BOOL "")
+set(CMAKE_C_FLAGS "@CMAKE_C_FLAGS@" CACHE STRING "")
+set(CMAKE_CXX_FLAGS "@CMAKE_CXX_FLAGS@" CACHE STRING "")
+
+set(ENABLE_MPI "@ENABLE_MPI@" CACHE BOOL "")
+set(MPI_C_COMPILER "@MPI_C_COMPILER@" CACHE FILEPATH "")
+set(MPI_CXX_COMPILER "@MPI_CXX_COMPILER@" CACHE FILEPATH "")
+set(MPI_Fortran_COMPILER "@MPI_Fortran_COMPILER@" CACHE FILEPATH "")
+set(MPIEXEC_EXECUTABLE "@GEOS_TPL_HOST_CONFIG_MPIEXEC@" CACHE FILEPATH "")
+set(MPIEXEC_NUMPROC_FLAG "@GEOS_TPL_HOST_CONFIG_MPIEXEC_NUMPROC_FLAG@" CACHE STRING "")
+
+set(CMAKE_PREFIX_PATH "@GEOS_TPL_HOST_CONFIG_PREFIX_PATH@" CACHE STRING "")
+set(RAJA_DIR "@RAJA_DIR@" CACHE PATH "")
+set(CAMP_DIR "@GEOS_TPL_HOST_CONFIG_CAMP_DIR@" CACHE PATH "")
+set(UMPIRE_DIR "@CHAI_DIR@" CACHE PATH "")
+set(CHAI_DIR "@CHAI_DIR@" CACHE PATH "")
+set(HDF5_DIR "@HDF5_DIR@" CACHE PATH "")
+set(CONDUIT_DIR "@CONDUIT_DIR@" CACHE PATH "")
+set(SILO_DIR "@SILO_DIR@" CACHE PATH "")
+set(ADIAK_DIR "@ADIAK_DIR@" CACHE PATH "")
+set(CALIPER_DIR "@CALIPER_DIR@" CACHE PATH "")
+set(PUGIXML_DIR "@PUGIXML_DIR@" CACHE PATH "")
+set(VTK_DIR "@VTK_DIR@" CACHE PATH "")
+set(FMT_DIR "@GEOS_TPL_HOST_CONFIG_FMT_DIR@" CACHE PATH "")
+set(METIS_DIR "@METIS_DIR@" CACHE PATH "")
+set(PARMETIS_DIR "@PARMETIS_DIR@" CACHE PATH "")
+set(SUPERLU_DIST_DIR "@SUPERLU_DIR@" CACHE PATH "")
+set(SUITESPARSE_DIR "@SUITESPARSE_DIR@" CACHE PATH "")
+# HypreDrive's package config may probe for a CMake HYPRE package while GEOS
+# consumes the superbuild's headers and archive directly. That probe can leave
+# HYPRE_DIR as HYPRE_DIR-NOTFOUND; recover that value on the next configure
+# while preserving a valid explicit -DHYPRE_DIR override.
+if(NOT DEFINED HYPRE_DIR OR HYPRE_DIR MATCHES "-NOTFOUND$")
+  set(HYPRE_DIR "@HYPRE_DIR@" CACHE PATH "" FORCE)
+endif()
+set(HYPREDRV_DIR "@HYPREDRV_DIR@" CACHE PATH "")
+set(SCOTCH_DIR "@SCOTCH_DIR@" CACHE PATH "")
+set(PETSC_DIR "@PETSC_INSTALL_DIR@" CACHE PATH "")
+set(MATHPRESSO_DIR "@MATHPRESSO_DIR@" CACHE PATH "")
+set(DOXYGEN_EXECUTABLE "@GEOS_TPL_HOST_CONFIG_DOXYGEN_EXECUTABLE@" CACHE FILEPATH "")
+set(UNCRUSTIFY_EXECUTABLE "@GEOS_TPL_HOST_CONFIG_UNCRUSTIFY_EXECUTABLE@" CACHE FILEPATH "")
+
+set(ENABLE_CALIPER "@ENABLE_CALIPER@" CACHE BOOL "")
+set(ENABLE_CUDA "@ENABLE_CUDA@" CACHE BOOL "")
+set(ENABLE_CUDA_NVTOOLSEXT "@GEOS_TPL_HOST_CONFIG_CUDA_NVTOOLSEXT@" CACHE BOOL "")
+set(ENABLE_HIP "@ENABLE_HIP@" CACHE BOOL "")
+set(ENABLE_OPENMP "@ENABLE_OPENMP@" CACHE BOOL "")
+set(ENABLE_HYPRE "@ENABLE_HYPRE@" CACHE BOOL "")
+set(ENABLE_HYPREDRV "@ENABLE_HYPREDRV@" CACHE BOOL "")
+set(ENABLE_HYPRE_DEVICE "@GEOS_TPL_HOST_CONFIG_HYPRE_DEVICE@" CACHE STRING "")
+set(ENABLE_HYPRE_GPU_AWARE_MPI "@GEOS_TPL_HOST_CONFIG_HYPRE_GPU_AWARE_MPI@" CACHE BOOL "")
+set(ENABLE_HYPRE_GPU_PROFILING "@ENABLE_HYPRE_GPU_PROFILING@" CACHE BOOL "")
+set(ENABLE_CALIPER_HYPRE "@GEOS_TPL_HOST_CONFIG_CALIPER_HYPRE@" CACHE BOOL "")
+set(ENABLE_HYPRE_MIXINT "@GEOS_TPL_HOST_CONFIG_HYPRE_MIXINT@" CACHE BOOL "")
+set(GEOS_LA_INTERFACE "@GEOS_TPL_HOST_CONFIG_LA_INTERFACE@" CACHE STRING "")
+set(ENABLE_TRILINOS "@ENABLE_TRILINOS@" CACHE BOOL "")
+set(ENABLE_PETSC "@ENABLE_PETSC@" CACHE BOOL "")
+set(ENABLE_METIS "@GEOS_TPL_HOST_CONFIG_METIS@" CACHE BOOL "")
+set(ENABLE_PARMETIS "@GEOS_TPL_HOST_CONFIG_PARMETIS@" CACHE BOOL "")
+set(ENABLE_SCOTCH "@ENABLE_SCOTCH@" CACHE BOOL "")
+set(ENABLE_SUPERLU_DIST "@ENABLE_SUPERLU_DIST@" CACHE BOOL "")
+set(ENABLE_SUITESPARSE "@ENABLE_SUITESPARSE@" CACHE BOOL "")
+set(ENABLE_SILO "@GEOS_TPL_HOST_CONFIG_SILO@" CACHE BOOL "")
+set(ENABLE_MATHPRESSO "@GEOS_TPL_HOST_CONFIG_MATHPRESSO@" CACHE BOOL "")
+set(ENABLE_VTK "@ENABLE_VTK@" CACHE BOOL "")
+set(ENABLE_VTK_WRAP_PYTHON "@ENABLE_VTK_WRAP_PYTHON@" CACHE BOOL "")
+set(ENABLE_UNCRUSTIFY "@GEOS_TPL_HOST_CONFIG_UNCRUSTIFY@" CACHE BOOL "")
+set(ENABLE_DOXYGEN OFF CACHE BOOL "")
+set(ENABLE_DOCS OFF CACHE BOOL "")
+set(ENABLE_EXAMPLES OFF CACHE BOOL "")
+set(ENABLE_BENCHMARKS OFF CACHE BOOL "")
+set(ENABLE_TESTS ON CACHE BOOL "")
+set(GEOS_ENABLE_TESTS ON CACHE BOOL "")
+
+# Compare the substituted option as a string because this cache file is
+# loaded before the downstream project establishes CMake's boolean policies.
+if("@ENABLE_CUDA@" STREQUAL "ON")
+  set(CMAKE_CUDA_COMPILER "@CMAKE_CUDA_COMPILER@" CACHE FILEPATH "")
+  set(CMAKE_CUDA_HOST_COMPILER "@CMAKE_CUDA_HOST_COMPILER@" CACHE FILEPATH "")
+  set(CUDA_TOOLKIT_ROOT_DIR "@CUDA_TOOLKIT_ROOT_DIR@" CACHE PATH "")
+  set(CUDA_ARCH "@CUDA_ARCH@" CACHE STRING "")
+  set(CMAKE_CUDA_ARCHITECTURES "@CMAKE_CUDA_ARCHITECTURES@" CACHE STRING "")
+  set(CMAKE_CUDA_STANDARD "@CMAKE_CUDA_STANDARD@" CACHE STRING "")
+  set(CMAKE_CUDA_STANDARD_REQUIRED ON CACHE BOOL "")
+  set(CMAKE_CUDA_FLAGS "@CMAKE_CUDA_FLAGS@" CACHE STRING "")
+endif()
+
+if("@ENABLE_HIP@" STREQUAL "ON")
+  set(CMAKE_HIP_COMPILER "@CMAKE_HIP_COMPILER@" CACHE FILEPATH "")
+  set(CMAKE_HIP_ARCHITECTURES "@CMAKE_HIP_ARCHITECTURES@" CACHE STRING "")
+  set(CMAKE_HIP_STANDARD "@CMAKE_HIP_STANDARD@" CACHE STRING "")
+  set(CMAKE_HIP_STANDARD_REQUIRED ON CACHE BOOL "")
+  set(ROCM_PATH "@ROCM_PATH@" CACHE PATH "")
+  set(HIP_ROOT "@HIP_ROOT@" CACHE PATH "")
+  set(CMAKE_HIP_FLAGS "@CMAKE_HIP_FLAGS@" CACHE STRING "")
+  set(GPU_TARGETS "@CMAKE_HIP_ARCHITECTURES@" CACHE STRING "")
+  set(AMDGPU_TARGETS "@CMAKE_HIP_ARCHITECTURES@" CACHE STRING "")
+endif()
+
+set(BLAS_LIBRARIES "@BLAS_LIBRARIES@" CACHE STRING "")
+set(LAPACK_LIBRARIES "@LAPACK_LIBRARIES@" CACHE STRING "")

patch/raja-reducer-assignment.patch

@@ -0,0 +1,94 @@
+diff --git a/include/RAJA/policy/cuda/reduce.hpp b/include/RAJA/policy/cuda/reduce.hpp
+--- a/include/RAJA/policy/cuda/reduce.hpp
++++ b/include/RAJA/policy/cuda/reduce.hpp
+@@ -1123,6 +1123,43 @@
+ #endif
+   }
+
++  //! assign a reducer while preserving ownership of host and device resources
++  Reduce& operator=(const Reduce& other)
++  {
++    if (this != &other)
++    {
++      // The implicitly generated assignment operator shallow-copies the
++      // reducer state.  In particular, it overwrites an owning tally pointer
++      // and leaks the tally allocated by the destination.  It also copies the
++      // device-ownership flag, which can make two reducers free the same
++      // device allocation.  Match the copy constructor's non-owning semantics
++      // after releasing resources currently owned by the destination.
++      if (parent == this)
++      {
++        delete tally_or_val_ptr.list;
++      }
++      else if (parent == nullptr)
++      {
++        val.teardownForDevice();
++      }
++
++      parent           = other.parent;
++      tally_or_val_ptr = other.tally_or_val_ptr;
++      val              = reduce_data_type(other.val);
++
++      if (parent && tally_or_val_ptr.list)
++      {
++        if (val.setupForDevice())
++        {
++          tally_or_val_ptr.val_ptr = val.init_grid_vals(
++              tally_or_val_ptr.list->new_value(currentResource()));
++          parent = nullptr;
++        }
++      }
++    }
++    return *this;
++  }
++
+   //! apply reduction upon destruction and cleanup resources owned by this copy
+   //  on device store in pinned buffer on host
+   RAJA_HOST_DEVICE
+diff --git a/include/RAJA/policy/hip/reduce.hpp b/include/RAJA/policy/hip/reduce.hpp
+--- a/include/RAJA/policy/hip/reduce.hpp
++++ b/include/RAJA/policy/hip/reduce.hpp
+@@ -1116,6 +1116,43 @@
+ #endif
+   }
+
++  //! assign a reducer while preserving ownership of host and device resources
++  Reduce& operator=(const Reduce& other)
++  {
++    if (this != &other)
++    {
++      // The implicitly generated assignment operator shallow-copies the
++      // reducer state.  In particular, it overwrites an owning tally pointer
++      // and leaks the tally allocated by the destination.  It also copies the
++      // device-ownership flag, which can make two reducers free the same
++      // device allocation.  Match the copy constructor's non-owning semantics
++      // after releasing resources currently owned by the destination.
++      if (parent == this)
++      {
++        delete tally_or_val_ptr.list;
++      }
++      else if (parent == nullptr)
++      {
++        val.teardownForDevice();
++      }
++
++      parent           = other.parent;
++      tally_or_val_ptr = other.tally_or_val_ptr;
++      val              = reduce_data_type(other.val);
++
++      if (parent && tally_or_val_ptr.list)
++      {
++        if (val.setupForDevice())
++        {
++          tally_or_val_ptr.val_ptr = val.init_grid_vals(
++              tally_or_val_ptr.list->new_value(currentResource()));
++          parent = nullptr;
++        }
++      }
++    }
++    return *this;
++  }
++
+   //! apply reduction upon destruction and cleanup resources owned by this copy
+   //  on device store in pinned buffer on host
+   RAJA_HOST_DEVICE