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multitrait changes - #531

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bhaller wants to merge 318 commits into
masterfrom
multitrait
Open

multitrait changes#531
bhaller wants to merge 318 commits into
masterfrom
multitrait

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@bhaller

@bhaller bhaller commented Jul 2, 2025

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This branch is the long-term branch for changes to implement multiple phenotypic traits in SLiM; it will likely become SLiM 5.1 or SLiM 6.0. It is is active development, and will often not build; it is not recommended for end users until further notice.

@codecov

codecov Bot commented Dec 21, 2025

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Codecov Report

❌ Patch coverage is 84.78261% with 35 lines in your changes missing coverage. Please review.
✅ Project coverage is 76.87%. Comparing base (b7d413d) to head (1e54a08).

Files with missing lines Patch % Lines
core/chromosome.cpp 83.58% 11 Missing ⚠️
core/community_eidos.cpp 80.39% 10 Missing ⚠️
core/community.cpp 92.59% 6 Missing ⚠️
core/chromosome.h 66.66% 4 Missing ⚠️
core/genomic_element.cpp 50.00% 3 Missing ⚠️
core/genomic_element_type.cpp 92.30% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #531      +/-   ##
==========================================
+ Coverage   75.62%   76.87%   +1.25%     
==========================================
  Files         114      117       +3     
  Lines       72808    78690    +5882     
  Branches    12874    14287    +1413     
==========================================
+ Hits        55061    60494    +5433     
- Misses      17747    18196     +449     
Files with missing lines Coverage Δ
core/community.h 100.00% <ø> (ø)
core/genomic_element.h 100.00% <ø> (ø)
core/genomic_element_type.h 100.00% <ø> (ø)
core/haplosome.cpp 49.82% <ø> (+1.31%) ⬆️
core/haplosome.h 76.00% <ø> (-0.32%) ⬇️
core/individual.cpp 60.72% <ø> (+7.53%) ⬆️
core/individual.h 32.75% <ø> (ø)
core/interaction_type.cpp 80.44% <ø> (ø)
core/interaction_type.h 90.32% <ø> (ø)
core/log_file.cpp 29.52% <ø> (ø)
... and 10 more

... and 73 files with indirect coverage changes

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bhaller added 29 commits January 2, 2026 12:31
bhaller and others added 30 commits July 17, 2026 10:38
small update to implementation of mutation storing
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2 participants