I build systems that take an ambiguous biomedical question and carry it through to a reproducible analysis — literature, study design, data acquisition, execution, write-up. Medicine by training, infrastructure by habit. Peking University, then Imperial College London — MSc Applied Multiomics in Biomedicine, incoming 2026.
| Project | What it actually does | Stack | |
|---|---|---|---|
01 |
Bioagent | LangGraph multi-agent system running a full research loop — literature → hypothesis → data acquisition from GEO/NCBI/GDC/ENCODE → sandboxed analysis → write-up, with checkpointing and cost budgets | Python · LangGraph |
02 |
ThyroPADA | Thyroid-ultrasound case annotation platform: auth, multi-study support, CSV export. The largest codebase here | FastAPI · SQLAlchemy · Alembic |
03 |
axon | Local-first LLM router that auto-discovers provider keys on the machine and exposes one OpenAI/Anthropic-compatible localhost endpoint | Python |
04 |
TopoLogos | Spatial-transcriptomics reasoning partner with three Socratic personas — empiricist, dialectician, gadfly. Deliberately not a pipeline executor | Python · BioMCP |
05 |
ci-coroner | GitHub Action that autopsies failed CI runs and verifies every log line it cites actually exists before posting | TypeScript |
06 |
skillgenesis | Self-evolving skill system — agents write, refine and merge executable skills through adversarial self-play behind a regression gate | TypeScript |
07 |
roast-my-pi | Parses publication and funding networks to compute a PI's independence ratio — whether they lead or ride team credit | HTML · JS |
08 |
cellhop | One-liner AnnData ↔ Seurat conversion in either direction, without dumping intermediate files | Python · R |
·· More — bioinformatics tooling, clinical apps, experiments
| Project | |
|---|---|
| biomedical-codex-skills | Nine-skill bundle for biomedical workflows — QC, pipeline triage, protocol-to-pipeline, RNA-seq scaffolding, HPC tuning |
| rverflow | Resolves R package version conflicts across CRAN/Bioconductor/GitHub before install |
| pad-to-vibe | Tablet sketches → local sync → MCP tool, so a coding agent can implement the drawing |
| publishable-research-orchestrator | Scores candidate research directions for publishability, then plans the winner |
| Gastric-Cancer scRNA-seq Pipeline | Single-cell pipeline on GSE163558 |
| pretext-med | Streaming clinical report generation with zero layout shift |
| scicolors | Scientific colour-palette toolkit |
| MedInterprint · diabeta-ai-insight · AI-review-Literature | Clinical and literature web apps |
Measured across 35 non-fork public repositories — 6.71 MB of source.
modular over monolithic
research-aware over generic
execution-first over presentation-heavy
real workflows over demo-only
