Sk/queries - #78

Draft

thompson318 wants to merge 47 commits into

devfrom

Commits on Feb 2, 2026

first query for flow sheets
skeating
committed
820840d

Commits on Feb 4, 2026

building up scripts
skeating
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fb3d6da

Commits on Feb 19, 2026

adding more files
skeating
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8476351

Commits on Aug 5, 2026

Merge branch 'dev' into sk/queries
skeating
committed
47240ff

Commits on Aug 9, 2026

Add and refine SQL scripts for EHR data extraction
skeating
committed
3961143

Commits on Aug 11, 2026

Started on functions to wrap snakemake around sql calls
thompson318
committed
cdec5ca

Commits on Aug 12, 2026

Started to implement caboodle look up code
thompson318
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9897259
Moved airway sql to sql directory
thompson318
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1f2cfbe
Setting up config and docker bits
thompson318
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bd72361

Commits on Aug 18, 2026

Caboodle setup goes into exporter.env
thompson318
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33e2c08
Format fix
thompson318
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9b291cb
Beginning of test for ehr integration
thompson318
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d4fde59
SQL formatting
thompson318
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d910831
Merge branch 'dev' into st/queries-to-snakemake
thompson318
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654db91
Test with ehr lookup
thompson318
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e8f29a7
use caboodle testing
thompson318
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86d5dea
Trying to test ehr and hash lookup with ftps
thompson318
committed
7fbcfc0

Commits on Aug 19, 2026

Commits on Aug 20, 2026

Commits on Aug 24, 2026

Commits on Aug 26, 2026

Commits on Aug 27, 2026

moved sql and implemented lab results
thompson318
committed
5d06ecc
Fixed column names in pseudon
thompson318
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c61164c
Flowsheets and labresults are star, not caboodle
thompson318
committed
a450faf

Commits on Aug 28, 2026

removed queries from proprietary database
skeating
committed
7b60b7d
removed queries from proprietary database
skeating
committed
83908c7

Commits on Aug 31, 2026