Skip to content

Fix: zarr pickling in SortingAnalyzer with try/except #4801

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
chrishalcrow merged 1 commit into from
Sep 23, 2026
+7 −1
Merged

Fix: zarr pickling in SortingAnalyzer with try/except #4801

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 7 additions & 1 deletion src/spikeinterface/core/sortinganalyzer.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1103,7 +1103,13 @@ def create_zarr(
if recording.check_serializability("json"):
_write_object_array(zarr_root, "recording", check_json(rec_dict), codec="json")
elif recording.check_serializability("pickle"):
_write_object_array(zarr_root, "recording", rec_dict, codec="pickle")
try:
_write_object_array(zarr_root, "recording", rec_dict, codec="pickle")
except:
warnings.warn(
"Failed to serialize recording with Pickle Codec! "
"The recording link will be lost for future load"
)
else:
warnings.warn("The Recording is not serializable! The recording link will be lost for future load")
else:
Expand Down
Loading