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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology
README.md

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 23 9

  2. SBOL-visual SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 39 18

  3. pySBOL3 pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 48 20

  4. sboljs3 sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 7 1

  5. SBOL-utilities SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 22 29

  6. SBOL-examples SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 4 4

Repositories

Showing 10 of 62 repositories
  • pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    SynBioDex/pySBOL3's past year of commit activity
    Python 48 MIT 20 44 (4 issues need help) 2 Updated Sep 9, 2026
  • sbol-rs Public

    Rust implementation of the Synthetic Biology Open Language (SBOL 3.1.0 & 2.3.0)

    SynBioDex/sbol-rs's past year of commit activity
    Rust 5 Apache-2.0 0 0 1 Updated Sep 8, 2026
  • SBOLCanvas Public
    SynBioDex/SBOLCanvas's past year of commit activity
    TypeScript 17 Apache-2.0 9 48 13 Updated Sep 1, 2026
  • SBOLExplorer Public
    SynBioDex/SBOLExplorer's past year of commit activity
    UnrealScript 5 MIT 2 31 8 Updated Aug 31, 2026
  • SbolStandardWebsite Public
    SynBioDex/SbolStandardWebsite's past year of commit activity
    TeX 4 CC0-1.0 3 15 0 Updated Aug 27, 2026
  • Excel-to-SBOL Public
    SynBioDex/Excel-to-SBOL's past year of commit activity
    Python 4 BSD-3-Clause 9 16 1 Updated Aug 25, 2026
  • pySBOL2 Public

    A pure Python implementation of the SBOL standard.

    SynBioDex/pySBOL2's past year of commit activity
    Python 21 Apache-2.0 8 31 1 Updated Aug 11, 2026
  • SeqTrainer Public

    ML training on SBOL data

    SynBioDex/SeqTrainer's past year of commit activity
    Jupyter Notebook 6 MIT 4 2 1 Updated Aug 4, 2026
  • SBOL-MCP Public
    SynBioDex/SBOL-MCP's past year of commit activity
    0 0 0 0 Updated Jul 30, 2026
  • SBOL-Validator Public

    A web application to validate SBOL files

    SynBioDex/SBOL-Validator's past year of commit activity
    HTML 9 Apache-2.0 4 16 6 Updated Jul 23, 2026
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