Conversation
HelminthDB is the 13th genomic project this release. Added it alongside the existing twelve in every per-project dependency list: genomicsRoot.xml: sampleDetailsForEda, OrthoMCLDependent, alphaFold, ExternalResourceUrl, analyzeWebreadyPartitionedTables orthomclGenomics.xml: checkOrthoCoreProteomeDirs and checkOrthoPeripheralProteomeDirs dependsExternal lists Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
rdemko2332
approved these changes
Sep 14, 2026
rdemko2332
left a comment
rdemko2332
left a comment
Contributor
There was a problem hiding this comment.
All ortho requirements are satisfied.
Contributor
|
Looks good to me |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
HelminthDB is the 13th genomic project this release. It is added alongside the existing twelve in every per-project dependency list.
Main/lib/xml/workflowTemplates/genomicsRoot.xml—<depends name="HelminthDB"/>in:sampleDetailsForEdaOrthoMCLDependentalphaFoldExternalResourceUrlanalyzeWebreadyPartitionedTablesMain/lib/xml/workflow/orthomclGenomics.xml— per the warning comment atgenomicsRoot.xml:59, also added to bothdependsExternallists:HelminthDB_checkOrthoCoreProteomeDirsHelminthDB_checkOrthoPeripheralProteomeDirsBoth files parse as valid XML.
Follow-up: the project list is duplicated across 7 blocks in 2 files, kept in sync only by a comment. See the linked issue for making it data-driven.
🤖 Generated with Claude Code