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@YalaLab

YalaLab

Computational Precision Health at UC Berkeley and UCSF

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  1. strata strata Public

    Human-Level Information Extraction from Clinical Reports with Fine-Tuned Language Models

    Jupyter Notebook 14 1

Repositories

Showing 10 of 11 repositories
  • rate Public

    A Python-based engine for processing radiology reports using the Qwen3 model with sglang for efficient batch inference. Includes quality control file generation and performance evaluation tools for comprehensive validation workflows with debug mode for faster iteration.

    YalaLab/rate's past year of commit activity
    Python 18 4 0 0 Updated May 20, 2026
  • rate-evals Public

    A comprehensive evaluation pipeline for Vision-Language Models on medical imaging tasks, with built-in support for multi-GPU processing, real-time progress tracking, and disease finding classification.

    YalaLab/rate-evals's past year of commit activity
    Python 18 6 3 3 Updated May 19, 2026
  • pillar-finetune Public

    Finetuning framework for Pillar medical imaging models.

    YalaLab/pillar-finetune's past year of commit activity
    Python 15 4 2 2 Updated Feb 26, 2026
  • pillar-pretrain Public

    This repository contains the pretraining code for the Pillar-0 model.

    YalaLab/pillar-pretrain's past year of commit activity
    Python 39 8 4 3 Updated Jan 13, 2026
  • rave Public

    A high-performance medical image processing engine for converting DICOM and NIfTI files into ML-ready formats with intelligent windowing and compression.

    YalaLab/rave's past year of commit activity
    Python 19 2 0 1 Updated Dec 17, 2025
  • pillar-0 Public
    CSS 6 0 0 0 Updated Dec 3, 2025
  • YalaLab/yalalab.github.io's past year of commit activity
    HTML 0 0 0 0 Updated Nov 19, 2025
  • SimMIM Public Forked from microsoft/SimMIM

    This is an official implementation for "SimMIM: A Simple Framework for Masked Image Modeling".

    YalaLab/SimMIM's past year of commit activity
    Python 0 MIT 109 0 0 Updated Aug 15, 2025
  • atlas Public
    YalaLab/atlas's past year of commit activity
    Python 20 Apache-2.0 0 1 0 Updated Mar 19, 2025
  • strata Public

    Human-Level Information Extraction from Clinical Reports with Fine-Tuned Language Models

    YalaLab/strata's past year of commit activity
    Jupyter Notebook 14 Apache-2.0 1 0 0 Updated Mar 19, 2025

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