Skip to content
@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

Pinned Loading

  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 70 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 60 11

  3. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 2 1

  4. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader orcestra-downloader Public

    Seamless CLI access to orcestra datasets

    Python 1

  6. handbook handbook Public

    Lab Handbook For BHKLab

    3

Repositories

Showing 10 of 258 repositories
  • science-portal-mailing Public
    bhklab/science-portal-mailing's past year of commit activity
    Python 0 1 2 1 Updated Sep 4, 2026
  • bhklab-website Public

    BHK Lab website

    bhklab/bhklab-website's past year of commit activity
    JavaScript 0 0 4 0 Updated Sep 4, 2026
  • mRMRe Public

    mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection

    bhklab/mRMRe's past year of commit activity
    C++ 21 6 15 1 Updated Sep 4, 2026
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii's past year of commit activity
    Jupyter Notebook 5 MIT 0 29 (3 issues need help) 5 Updated Sep 3, 2026
  • snf2 Public

    Modern Python implementation of SNF package

    bhklab/snf2's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 3, 2026
  • readii_2_roqc Public
    bhklab/readii_2_roqc's past year of commit activity
    Jupyter Notebook 2 1 4 1 Updated Sep 3, 2026
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools's past year of commit activity
    Python 60 MIT 11 30 (1 issue needs help) 8 Updated Sep 3, 2026
  • readii-fmcib Public

    Taming the unicorn that is FMCIB

    bhklab/readii-fmcib's past year of commit activity
    Python 2 MIT 0 1 0 Updated Sep 3, 2026
  • ocscc-tumor-characterization Public

    OCSCC Tumor Characterization applies MedSAM segmentation to an oral cavity squamous cell cancer patient cohort to explore how it affects treatment planning.

    bhklab/ocscc-tumor-characterization's past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Sep 3, 2026
  • med-image_test-data Public
    bhklab/med-image_test-data's past year of commit activity
    Python 2 0 0 0 Updated Sep 3, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…