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Nineteen literature-derived analysis views (preview), one commit each - #59

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alisman merged 27 commits into

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session/new-features

Oct 23, 2026

Merged

Nineteen literature-derived analysis views (preview), one commit each#59
alisman merged 27 commits into
masterfrom
session/new-features

Commits on Oct 23, 2026
- Preview view kinds: one registry, a header badge, and the method check's exemption
  
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- acquired view (preview): alterations acquired under therapy, before vs after a treatment start
  
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- ctdna view (preview): plasma cfDNA against tissue, agreement per gene and survival by ctDNA detected
  
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- exclusivity view (preview): mutual exclusivity against each tumour's alteration burden (DISCOVER)
  
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- txendpoints view (preview): real-world treatment endpoints from a treatment start
  
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- predictive view (preview): gene × treatment interaction per gene
  
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- cutpoint view (preview): a biomarker's best survival cut, corrected for the search
  
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- forest view (preview): one exposure's hazard ratio per cancer type, random-effects pooled
  
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- adjusted view (preview): covariate-adjusted alteration enrichment between two cohorts
  
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- instability view (preview): aneuploidy score, FGA and arm-level gains and losses from segments
  
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- riskmodel option validateOn (preview): external validation on another cohort
  
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- actionability view (preview): highest OncoKB level per patient, and primary vs metastasis concordance
  
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- drivernegative view (preview): genes enriched in patients without a canonical driver
  
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- e2e: scroll the oncoprint to the top before hovering or dragging on it
  
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- NEW mark on view kinds cBioPortal has no counterpart for
  
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- NEW mark: orange text, and on the Examples tab's filter chips
  
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- Examples tab: the views and topics as link lists in columns
  
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- Add a view: pills on a grey fill
  
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- multistate view (preview): the illness-death model, start to progression to death
  
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- rmst view (preview): restricted mean survival time and landmark analysis
  
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- hla view (preview): HLA class I homozygosity and HLA LOH, and survival by each
  
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- ctdna option chFilter (preview): clonal-haematopoiesis-aware plasma calls, with before/after
  
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- organotropism view (preview): which genes go with metastasis to which organ
  
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- molsubtype view (preview): endometrial molecular subtypes per patient, by an attribute, and OS by subtype
  
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- germline view (preview): germline carriers per gene and their tumours' somatic second hits
  
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- Preview views read stored numbers through finiteSql
  
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- View settings take uploaded columns wherever they take a clinical attribute
  
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Commits

Commits on Oct 23, 2026