Implement Custom Types -- AttributeType - #1289

Merged

dimitri-yatsenko merged 64 commits into

claude/upgrade-adapted-type-1W3ap

Jan 1, 2026

Commits on Dec 21, 2025

Introduce AttributeType system to replace AttributeAdapter
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2be5f11
Update documentation for new AttributeType system
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055c9c6
Apply ruff-format fixes to AttributeType implementation
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af9bd8d
Add DJBlobType and migration utilities for blob columns
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9bd37f6
Clarify migration handles all blob type variants
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c8d8a22
Fix ruff linter errors: add migrate to __all__, remove unused import
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61db015
Remove serializes flag; longblob is now raw bytes
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78e0d1d
Remove unused blob imports from fetch.py and table.py
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c173356
Update docs: use <djblob> for serialized data, longblob for raw bytes
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106f859
Merge branch 'claude/add-file-column-type-LtXQt' into claude/upgrade-adapted-type-1W3ap
dimitri-yatsenko
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e293fec

Commits on Dec 22, 2025

Commits on Dec 23, 2025

Merge remote-tracking branch 'origin/claude/add-file-column-type-LtXQt' into claude/upgrade-adapted-type-1W3ap
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8091225

Commits on Dec 24, 2025

Merge remote-tracking branch 'origin/claude/add-file-column-type-LtXQt' into claude/upgrade-adapted-type-1W3ap
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c34a5b8

Commits on Dec 25, 2025

Add storage types redesign spec
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cab10f6
Merge remote-tracking branch 'origin/pre/v2.0' into claude/upgrade-adapted-type-1W3ap
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261543f
Update storage types spec with OAS integration approach

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ecac82d
Unify external storage under OAS with content-addressed region

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7e7f968
Make <djblob@store> and <attach@store> return values transparently

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495d7f7
Introduce layered storage architecture with content core type

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7ae8f15
Add parameterized AttributeTypes and content vs object comparison

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6fcc4d3
Make content storage per-project and add migration utility

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b87342b
Add filepath as third OAS region with ObjectRef interface

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40c1dbb
Redesign filepath as URI reference tracker and add json core type

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dbf092d
Simplify filepath to filepath@store with relative paths for portability

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43c1999
Simplify to two-layer architecture: database types + AttributeTypes

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b9b6e34
Add three-layer type architecture with core DataJoint types

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2a5d161
Use angle brackets for all AttributeTypes in definitions

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d36739d
Add implementation plan for storage types redesign

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5c1e854
Implement Phase 1: Core type system with store parameter support

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979f45b
Remove legacy AttributeAdapter support, update tests for AttributeType

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6926c58
Simplify core type system: remove SERIALIZED_TYPES, clarify blob semantics

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97bc162
Simplify type system: only core types and AttributeTypes

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2de222a
Define complete core type system with blob→longblob mapping

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f35e027
Implement Phase 2: Content-Addressed Storage

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746108a
Apply ruff-format to content_registry.py

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328a59a
Remove legacy compatibility shims: attribute_adapter.py, bypass_serialization

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bbbfbc3
Update implementation plan to reflect actual implementation

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3c4608f
Move built-in AttributeTypes to separate builtin_types.py module

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70fb567
Implement ObjectType for path-addressed storage

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ad09877
Remove migration phase from implementation plan

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dd8c623
Add staged insert documentation to implementation plan

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e1b3be1
Implement Phase 3: AttachType, XAttachType, FilepathType

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ca0b914
Implement Phase 5 (GC) and Phase 6 (Tests)

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d0f5614

Commits on Dec 26, 2025

Add object type garbage collection support

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73535de
Move EXTERNAL_TABLE_ROOT to external.py (deprecated)

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3fc00ee
Remove deprecated external.py module

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b4512c9

Commits on Dec 30, 2025

Replace ClassProperty with metaclass properties

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c951ee5

Commits on Dec 31, 2025

Simplify test infrastructure to use docker-compose services

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6d5b745
Fix table_name and uuid type resolution bugs

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4edf5ed
Use <djblob> for automatic serialization, fix is_blob detection

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5aa191f
Fix settings tests and config loading

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8140530
Fix adapted_attributes tests for new type system

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09d1f1d
Fix test failures and update to new type system

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d51c16e

Commits on Jan 1, 2026

Fix object type and remove legacy external tables

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7d32ea1
Remove legacy log table and bump version to 2.0.0a1

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ef6c66d
Fix Table.describe() to show core types instead of native types

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0107d8d
Fix config precedence: environment variables now override config files

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c486936
Fix test compatibility and remove deprecated s3.py

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27a3778
Remove dead code from Table class

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d956288
Simplify test setup and reorganize test structure

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c96581e
Fix pyparsing deprecation warnings

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a82128d
Fix pydantic model_fields deprecation warning

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08ed432