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Merge in upstream changes for 0.13.1 - #134

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douglowe wants to merge 312 commits into

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develop-testmerge

Draft

Merge in upstream changes for 0.13.1#134
douglowe wants to merge 312 commits into
developfrom
develop-testmerge

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Commits on Sep 15, 2026
- feat(cli): :warning: render validation errors safely
  kikkomep
  committed
  48bf296
- refactor: :art: resolve linter warnings
  kikkomep
  committed
  1a7632c
- port updates from recent PRs to ro-crate 1.3
  
  simleo
  authored and
  kikkomep
  committed
  41cd9fc
- feat(graph): :sparkles: add graph transformer base model
  kikkomep
  committed
  80531e0
- test(graph): :white_check_mark: cover transformer base model
  kikkomep
  committed
  74aca87
- feat(graph): :sparkles: add validation candidate marker
  kikkomep
  committed
  9603e8d
- feat(profiles): :sparkles: use graph markers for entity scope
  kikkomep
  committed
  ab9b37f
- test(graph): :white_check_mark: cover validation candidate scope
  kikkomep
  committed
  2ea685f
- feat(shacl): :sparkles: prepare transient graph before validation
  kikkomep
  committed
  3a8d0cf
- docs(graph): :memo: document graph transformer extension
  kikkomep
  committed
  782f74c
Commits on Sep 16, 2026
- chore: 🔖 update changelog (v0.11.4)
  kikkomep
  committed
  7d67157
- chore(deps): 🔧 update dependencies in poetry.lock (v0.11.4)
  kikkomep
  committed
  a8a2346
- chore(release): 🔖 bump version to 0.11.4
  kikkomep
  committed
  b0c2107
- Merge pull request #207 from kikkomep/feat/check-result-model
  kikkomep
  authored
  e182f9e
- Merge branch 'develop' into feat/exception-propagation
  kikkomep
  authored
  acdcc75
- Merge branch 'develop' into feat/check-dependencies-with-skip-reporting
  kikkomep
  authored
  64b5021
Commits on Sep 17, 2026
- refactor(shacl): :truck: move transformer core under SHACL requirements
  kikkomep
  committed
  a46eb34
- refactor(transformers): :truck: separate implementations from SHACL core
  kikkomep
  committed
  21590fe
- feat(shacl): :sparkles: activate graph transformers from shapes
  kikkomep
  committed
  822c26b
- test(profiles): :white_check_mark: cover preprocessing candidate scope
  kikkomep
  committed
  e78b4fd
- docs(transformers): :memo: describe SHACL engine and implementation catalog
  kikkomep
  committed
  fc45559
- Merge pull request #208 from kikkomep/feat/check-dependencies-with-skip-reporting
  kikkomep
  authored
  6f38273
- Merge branch 'develop' into feat/exception-propagation
  kikkomep
  authored
  f1864de
- test: 🧪 update RO-Crate 1.2 context check identifier
  kikkomep
  committed
  72bcc55
- port updates from #207 and #208 to ro-crate 1.3
  
  simleo
  authored and
  kikkomep
  committed
  5f2f9dc
Commits on Sep 18, 2026
- feat(profiles): validate Schema.org IRI protocols with SHACL
  kikkomep
  committed
  7f6e803
- test(profiles): cover Schema.org IRI protocol validation
  kikkomep
  committed
  17f4f9d
- Merge pull request #209 from kikkomep/feat/exception-propagation
  kikkomep
  authored
  4c4fee5
- port updates from #209 to ro-crate 1.3
  
  simleo
  authored and
  kikkomep
  committed
  a99d83d
Commits on Sep 21, 2026
- Merge pull request #210 from kikkomep/feat/default-profile-ro-crate-1.2
  kikkomep
  authored
  8cabb0e
- Merge pull request #211 from kikkomep/fix/issue-188-https-schema-org-iris
  kikkomep
  authored
  4e56f94
- port updates from #210 and #211 to ro-crate 1.3
  
  simleo
  authored and
  kikkomep
  committed
  bc2f76e
- rocrate-1.3: add metadata document tests
  
  simleo
  authored and
  kikkomep
  committed
  ce4856c
- fix(graph): treat schema:additionalType as a reference predicate
  kikkomep
  committed
  c0cc789
- test(profiles): narrow HTTPS Schema.org @id compatibility assertion
  kikkomep
  committed
  29d8806
- rocrate-1.3: add contextual entities tests
  
  simleo
  authored and
  kikkomep
  committed
  8844dbd
Commits on Sep 22, 2026
- rocrate-1.3: add attached rocrates tests
  
  simleo
  authored and
  kikkomep
  committed
  7e8a3ab
- rocrate-1.3: add detached rocrates tests
  
  simleo
  authored and
  kikkomep
  committed
  7258902
- rocrate-1.3: add metadata entities tests
  
  simleo
  authored and
  kikkomep
  committed
  06637c5
- rocrate-1.3: add metadata descriptor tests
  
  simleo
  authored and
  kikkomep
  committed
  ba83276
- rocrate-1.3: add root data entity tests
  
  simleo
  authored and
  kikkomep
  committed
  fb90491
- perf(validation): ⚡️ reuse selected profiles for statistics
  kikkomep
  committed
  401b8d6
Commits on Sep 23, 2026
- rocrate-1.3: add data entities tests
  
  simleo
  authored and
  kikkomep
  committed
  83ab156
- feat(validation): ✨ add reusable validation preparation
  kikkomep
  committed
  6bd4581
- rocrate-1.3: add referenced rocrate tests
  
  simleo
  authored and
  kikkomep
  committed
  f04b1fa
- perf(validation): ⚡️ reuse prepared profiles across crate bases
  kikkomep
  committed
  08d317e
- docs(validation): 📝 document reusable validation lifecycle
  kikkomep
  committed
  4c88ced
- rocrate-1.3: add test_availability_flags
  
  simleo
  authored and
  kikkomep
  committed
  cc1f15f
- rocrate-1.3: add test_ro_crate_1_3
  
  simleo
  authored and
  kikkomep
  committed
  56f9880
Commits on Sep 24, 2026
Commits on Sep 25, 2026
Commits on Sep 26, 2026
- fix(validation): 🛡️ preserve source-first overlay execution
  kikkomep
  committed
  a73f90d
- fix(validation): 🛡️ resolve inherited overlay check dependencies
  kikkomep
  committed
  996b52a
- fix(validation): 🛡️ honor effective overlay check skips
  kikkomep
  committed
  709e756
- fix(shacl): 🛡️ load overlay profile graphs once
  kikkomep
  committed
  22455d3
- test(profile): ✅ preserve source-first overlay traversal
  kikkomep
  committed
  44b6cee
- test(validation): ✅ cover inherited overlay dependencies
  kikkomep
  committed
  e80460d
- test(validation): ✅ cover overlay check skip identities
  kikkomep
  committed
  681461a
- test(shacl): ✅ cover one-time overlay graph loading
  kikkomep
  committed
  37e8c11
- test(validation): ✅ adapt test contexts to validation API
  kikkomep
  committed
  9299997
- refactor(cli): 🎨 update color labels
  kikkomep
  committed
  2316a43
- test(profile): ✅ cover overlay dependency closure
  kikkomep
  committed
  09a9c3a
- test(profile): ✅ cover inherited marker namespace mapping
  kikkomep
  committed
  1aeb95a
- test(profile): ✅ isolate default profile context checks
  kikkomep
  committed
  4fc8c06
Commits on Sep 28, 2026
Commits on Sep 29, 2026
Commits on Sep 30, 2026
- Merge pull request #215 from kikkomep/fix/wrong-skipped-checks-count
  kikkomep
  authored
  0465b90
- Merge pull request #206 from crs4/feat/ro-crate-1.3
  simleo
  authored
  9d61fc8
- chore: 🔖 update changelog (v0.12.0)
  kikkomep
  committed
  c0682cb
- chore(deps): 🔧 update dependencies in poetry.lock (v0.12.0)
  kikkomep
  committed
  4e0bf57
- chore(release): 🔖 bump version to 0.12.0
  kikkomep
  committed
  7a895d5
Commits on Oct 1, 2026
Commits on Oct 5, 2026
Commits on Oct 6, 2026
Commits on Oct 7, 2026
- chore(lint): 🧹 fix lint warnings
  kikkomep
  committed
  3bcf7c8
Commits on Oct 8, 2026
- feat(rocrate): 📦 detect package type from input context
  kikkomep
  committed
  bebee42
- fix(profiles): 🧭 use explicit package type in checks
  kikkomep
  committed
  4dd34ef
- feat(cli): 📦 expose packaging mode selection
  kikkomep
  committed
  06c2931
- test(cli): 🧪 cover packaging mode option
  kikkomep
  committed
  93b1d2c
- feat(reports): 📦 show package type and validation scope
  kikkomep
  committed
  595fcc8
- test(rocrate): 🧪 cover package type detection and reporting
  kikkomep
  committed
  b55d698
- test(profiles): 🧪 address detached RO-Crate inputs explicitly
  kikkomep
  committed
  47db9ac
- chore(lint): 🧹 resolve pre-commit diagnostics
  kikkomep
  committed
  63e38d1
- fix(validation): 📦 allow attached metadata-only document inputs
  kikkomep
  committed
  858a0d3
- fix(profiles): 🧭 rely on detached data entity requirement
  kikkomep
  committed
  38790db
- test(profiles): 🧪 expect detached web-based identifier check
  kikkomep
  committed
  884f075
- fix(cli): 💬 describe package mode as assumed
  kikkomep
  committed
  66da2b9
- docs(package-modes): 📚 explain modes and validation scope
  kikkomep
  committed
  3b1a66e
Commits on Oct 9, 2026
Commits on Oct 13, 2026
Commits on Oct 14, 2026
Commits on Oct 15, 2026
- Sorted imports in test_wfrc_create_action.py
  EttoreM
  committed
  37b1c00
Commits on Oct 16, 2026
- Added the other action types ( and ) to the SHACL constraints and corresponding tests.
  EttoreM
  committed
  57a1413
Commits on Oct 19, 2026
- Fixed ruff error
  EttoreM
  committed
  2b9490a
- Merge pull request #216 from eScienceLab/111-workflow-run-action
  simleo
  authored
  03cc5e1
- Merge pull request #230 from kikkomep/enhancement/crate-type-detection
  kikkomep
  authored
  bcfd088
- build(deps): bump crate-ci/typos
  dependabot[bot]
  authored
  e022f65
Commits on Oct 20, 2026
Commits on Oct 21, 2026
Commits on Oct 22, 2026
- Allow rich 14
  faizollah
  committed
  64ded52
Commits on Oct 26, 2026
Commits on Oct 28, 2026
- fix(crate): 🔗 resolve entity IDs against JSON-LD @base
  kikkomep
  committed
  e9ef43e
- fix(profiles): 🌐 use resolved IDs for web entity checks
  kikkomep
  committed
  49638aa
- test(validation): 🧪 cover JSON-LD @base resolution
  kikkomep
  committed
  5e6a7de
Commits on Oct 29, 2026
Commits on Nov 5, 2026
- fix(models): 🧩 propagate effective IDs through profile inheritance
  kikkomep
  committed
  70777f3
- test(profiles): 🧪 cover inherited profile identity and ordering
  kikkomep
  committed
  59d2b9b
Commits on Nov 6, 2026
Commits on Nov 9, 2026
- fix(profiles): 🧩 declare RootDataEntity equivalence between RO-Crate 1.3 and 1.2
  kikkomep
  committed
  c285191
- test(profiles): 🧪 cover RootDataEntity equivalence across RO-Crate versions
  kikkomep
  committed
  590d064
- Merge pull request #247 from kikkomep/fix/root-data-entity-equivalence
  simleo
  authored
  206c067
- move wroc 1.0 profile to version-specific subdir
  simleo
  committed
  319a2bd
- wroc 1.1: first draft
  simleo
  committed
  7997715
- wroc 1.1: fix prof:isTransitiveProfileOf
  simleo
  committed
  1485d83
- workflow-ro-crate tests: set profile to 1.0
  simleo
  committed
  6a5dacd
- add a test for wroc 1.1
  simleo
  committed
  3353232
- fix(tests): replace skip_checks with metadata_only
  
  kikkomep
  authored and
  simleo
  committed
  7176347
- move workflow_roc_v1_1
  simleo
  committed
  41e4942
- log issues when the expected validation result is True
  simleo
  committed
  4a1bb93
- add test for valid wroc with license as a string
  simleo
  committed
  1c47a90
- fix ruff check
  simleo
  committed
  fba3365
- wroc 1.1: add main workflow tests
  simleo
  committed
  d859cc9
- wroc 1.1: add tests for missing tests and examples
  simleo
  committed
  f2b5ff8
- wroc 1.1 RDE conformsTo: change hasValue to pattern
  simleo
  committed
  90f2acc
- wroc 1.1: add test for bad RDE conformsTo
  simleo
  committed
  769404c
- wroc 1.1: add test for readme and root metadata
  simleo
  committed
  572efab
- wroc 1.1: add workflow step constraints
  simleo
  committed
  64e56e3
Commits on Nov 10, 2026
- wroc 1.1: add workflow input/output constraints
  simleo
  committed
  d357eaa
- wroc-1.1: add test and examples to valid crate
  simleo
  committed
  462a1c1
- wroc-1.1: fix step constraints
  simleo
  committed
  176c369
- Merge pull request #243 from crs4/feat/add-wroc-1.1
  simleo
  authored
  d3ff8bc
Commits on Nov 11, 2026

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