grey-box · Coriannder · Apr 1, 2026 · Jul 22, 2026 · Jul 29, 2026 · Jul 29, 2026
diff --git a/.DS_Store b/.DS_Store
diff --git a/.env b/.env
@@ -1,6 +1,18 @@
 # Project Codex — environment variables
 # Copy this file to .env and fill in your values.
 
-NEO4J_URI=bolt://127.0.0.1:7687
+DRUGBANK_API_KEY=
+DRUGBANK_API_BASE=https://api.drugbank.com/discovery/v1
+DRUGBANK_RELEASE=API
+
+ICD_CLIENT_ID=
+ICD_CLIENT_SECRET=
+
+NEO4J_URI=bolt://localhost:7687
 NEO4J_USER=neo4j
-NEO4J_PASSWORD=codexpassword
+NEO4J_PASSWORD=changeme
+NEO4J_DB=neo4j
+
+RATE_LIMIT_RPM=100
+LOG_LEVEL=INFO
+FORCE=1
diff --git a/.env.example b/.env.example
@@ -1,6 +1,18 @@
 # Project Codex — environment variables
 # Copy this file to .env and fill in your values.
 
+DRUGBANK_API_KEY=
+DRUGBANK_API_BASE=https://api.drugbank.com/discovery/v1
+DRUGBANK_RELEASE=API
+
+ICD_CLIENT_ID=
+ICD_CLIENT_SECRET=
+
 NEO4J_URI=bolt://localhost:7687
 NEO4J_USER=neo4j
-NEO4J_PASSWORD=codex-password
+NEO4J_PASSWORD=changeme
+NEO4J_DB=neo4j
+
+RATE_LIMIT_RPM=100
+LOG_LEVEL=INFO
+FORCE=1
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,30 @@
+# Dependencies
+node_modules/
+.pnp
+.pnp.js
+
+# Build outputs
+dist/
+build/
+*.egg-info/
+
+# Python cache & virtual environments
+__pycache__/
+*.py[cod]
+*$py.class
+.venv/
+venv/
+ENV/
+
+# Environment & local files
+.env
+.env.local
+.env.*.local
+
+# IDE & OS
+.idea/
+.vscode/
+*.swp
+*.swo
+.DS_Store
+Thumbs.db
diff --git a/README.md b/README.md
@@ -1,84 +1,23 @@
 # codex-cli — Medical Translation Terminal
 
-Test the backend translation engine directly from your terminal.
-No frontend, no Flask, no middleware. Just Neo4j + Python.
-
 ---
 
 ## Setup (once)
 
-### 1 — Start Neo4j
 ```bash
-docker compose up -d
-# Wait ~20 seconds for Neo4j to be ready
+docker compose up --build
+# Wait ~30 seconds for Neo4j, frontend, and api to be ready
 # Optional: check http://localhost:7474 in a browser (login: neo4j / changeme)
 ```
 
-### 2 — Install Python dependencies
-```bash
-pip install -r requirements.txt
-```
-
-### 3 — Run the CLI
-```bash
-python cli.py
-```
-
 ---
 
 ## Usage
 
 ```
-codex> demo                    ← load sample data first (run this once)
-codex> ibuprofen               ← type a drug name, then answer prompts
-  Target language code: es
-  Country code: MX
-  → ibuprofeno  (Spanish)  brand: Advil  [MX]
-
-codex> paracetamol
-  Target language code: fr
-  Country code: FR
-  → paracétamol  (French)  brand: Doliprane  [FR]
-
-codex> audit ibuprofen         ← show missing translations / brands
-codex> load /path/to/pack.json ← load a new language pack
-codex> quit
-```
-
-### Language codes
-Code - Language
-
-`en` - English 
-`es` - Spanish 
-`fr` - French 
-`ru` - Russian 
-`uk` - Ukrainian 
-
-### Country codes
-`US  GB  MX  FR  ES  NG  RU  UA  CA  PL  IN  DE  BR  AU  ZA`
-
----
-
-## Language pack format
-
-```json
-{
-  "language": {"code": "pt", "name": "Portuguese"},
-  "terms": [
-    {
-      "canonical": "Ibuprofen",
-      "entries": [
-        {"translation": "ibuprofeno", "country": "BR", "brand": "Advil"},
-        {"translation": "ibuprofeno", "country": "PT", "brand": null}
-      ]
-    }
-  ]
-}
-```
-
-Save as `portuguese_pack.json`, then:
-```bash
-codex> load portuguese_pack.json
+Use http://localhost:9000 for the frontend
+Use http://localhost:7474 for the Neo4j backend
+Use http://localhost:8000/docs to view the API
 ```
 
 ---
@@ -95,7 +34,7 @@ And update `docker-compose.yml`:
 NEO4J_AUTH: "neo4j/your_new_password"
 ```
 
-Then restart: `docker compose down && docker compose up -d`
+Then restart: `docker compose down && docker compose up -d && docker compose up --build`
 
 ---
 
@@ -104,5 +43,5 @@ Then restart: `docker compose down && docker compose up -d`
 ```bash
 docker compose down -v    # -v removes the data volume
 docker compose up -d
-# Then reload demo data:  codex> demo
+docker compose up --build
 ```
diff --git a/api/__pycache__/__init__.cpython-312.pyc b/api/__pycache__/__init__.cpython-312.pyc
diff --git a/api/__pycache__/config.cpython-312.pyc b/api/__pycache__/config.cpython-312.pyc
diff --git a/api/__pycache__/db.cpython-312.pyc b/api/__pycache__/db.cpython-312.pyc
diff --git a/api/__pycache__/dependencies.cpython-312.pyc b/api/__pycache__/dependencies.cpython-312.pyc
diff --git a/api/__pycache__/main.cpython-312.pyc b/api/__pycache__/main.cpython-312.pyc
diff --git a/api/config.py b/api/config.py
diff --git a/api/models/condition.py b/api/models/condition.py
diff --git a/api/models/drug.py b/api/models/drug.py
diff --git a/api/routers/__pycache__/__init__.cpython-312.pyc b/api/routers/__pycache__/__init__.cpython-312.pyc
diff --git a/api/routers/__pycache__/conditions.cpython-312.pyc b/api/routers/__pycache__/conditions.cpython-312.pyc
diff --git a/api/routers/__pycache__/drugs.cpython-312.pyc b/api/routers/__pycache__/drugs.cpython-312.pyc
diff --git a/api/routers/__pycache__/sources.cpython-312.pyc b/api/routers/__pycache__/sources.cpython-312.pyc
diff --git a/api/routers/__pycache__/translate.cpython-312.pyc b/api/routers/__pycache__/translate.cpython-312.pyc
diff --git a/api/.DS_Store → backend/.DS_Store b/api/.DS_Store → backend/.DS_Store
diff --git a/LICENSE → backend/LICENSE b/LICENSE → backend/LICENSE
diff --git a/api_documentation.md → backend/api_documentation.md b/api_documentation.md → backend/api_documentation.md
@@ -155,6 +155,14 @@ Returns a list of all language codes currently stored in the system.
 * **Method:** GET
 
 * **Path:**/languages
+Returns all language codes currently stored in Neo4j.
+
+Response Example:
+```json
+{
+  "languages": ["en", "es", "fr", "pt"]
+}
+```
 
 #### Error Handling
 The API uses standard HTTP status codes.

diff --git a/backend/codex_build/Dockerfile b/backend/codex_build/Dockerfile
@@ -0,0 +1,13 @@
+FROM python:3.10-slim
+
+WORKDIR /app
+
+COPY requirements.txt ./
+RUN pip3 install --no-cache-dir -r requirements.txt
+RUN pip3 install requests
+
+COPY . .
+
+EXPOSE 8000
+
+CMD ["python3", "api.py"]