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feat: Research Projects — self-contained, git-backed research entities (#663) - #671

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jeonghun-jj-lee wants to merge 22 commits into
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feat: Research Projects — self-contained, git-backed research entities (#663)#671
jeonghun-jj-lee wants to merge 22 commits into
mainfrom
amico/issue-663-research-projects

refactor: deprecate vault paths from autoresearch skills — project-only

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