All pull requests

Pull requests

• iqtree: update citation and dev URL to IQ-TREE 3

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  #13685·pmuskusv opened Nov 11, 2026Contributor·2 tasks done·

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• fgbio: scale JVM heap with task.memory

  Ready for Reviewsize/s
  #13684·mcmero opened Nov 11, 2026Contributor·2 of 5 tasks·

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• Move 12 deacon, glimpse, leehom and trimmomatic modules from quay.io to Seqera Containers

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  #13683·adamrtalbot opened Nov 10, 2026Contributor·7 of 11 tasks·

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• Move 12 epa-ng, gappa, mafft and mOTUs modules from quay.io to Seqera Containers

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  #13682·adamrtalbot opened Nov 10, 2026Contributor·4 of 8 tasks·

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• Add hgtsite/call module

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  #13681·iraajgangavaram opened Nov 10, 2026Contributor·11 of 14 tasks·

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• Add sbwf fastq_quant_kallistobustools

  Ready for Reviewsize/m
  #13680·atrigila opened Nov 10, 2026Contributor·

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• rastair2/mbias: new module; rastair2/call: take M-bias cutoffs

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  #13678·eduard-watchmaker opened Nov 10, 2026Contributor·13 tasks done·

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• fix(bowtie2): extract version from the CPU-specific align binary banner

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  #13676·pinin4fjords opened Nov 10, 2026Member·5 tasks done·

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• unzip: switch to Seqera containers, fix dependent tests

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  #13669·adamrtalbot opened Nov 10, 2026Contributor·8 of 14 tasks·

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• style: add publication metadata to all snapaligner modules

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  #13667·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all star modules

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  #13666·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all salmon modules

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  #13665·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all rsem modules

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  #13664·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all msisensorpro modules

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  #13663·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all kallisto modules

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  #13662·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all htslib modules

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  #13661·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all hisat2 modules

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  #13660·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all gffread modules

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  #13659·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all gatk4 modules

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  #13658·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all bwa modules

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  #13657·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all bowtie2 modules

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  #13656·maxulysse opened Nov 10, 2026Member·1 task done·

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• style: add publication metadata to all bowtie modules

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  #13655·maxulysse opened Nov 10, 2026Member·1 task done·

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• bismark: bump to 3.2.0

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  #13653·FelixKrueger opened Nov 10, 2026Contributor·5 tasks done·

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• new submodule for bullseye

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  #13647·brovolia opened Nov 10, 2026Contributor·

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• bam_taps_conversion: optional rastair version 2 caller (use_rastair2)

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  #13641·eduard-watchmaker opened Nov 9, 2026Contributor·7 tasks done·

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  9